PITG_00016 (Phytophthora infestans)
Pipsqueak

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF05225 (HTH_psq) IPR007889 PITG_00016 T314020_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Phyra78816
M02437_2.00 		Phytophthora ramorum
NNYRNWACAN
NTGTWNYRNN		 PBM
Weirauch et al.(2014)
pTH7817 		0.818 0.818
For this family, TFs with SR scores > 0.778 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PITG_00016T0 Pipsqueak 25 69

Links

Other Pipsqueak family TFs
Other Phytophthora infestans TFs

9 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
estExt_fgenesh1_kg.C_140377 Phytophthora capsici estExt_fgenesh1_kg.C_140377 I 0.864
fgenesh_scip_prom.28083.10252 Phytophthora lateralis fgenesh_scip_prom.28083.10252 I 0.841
fgenesh_scip_prom.46568.1708 Phytophthora kernoviae fgenesh_scip_prom.46568.1708 I 0.818
Phyra78816 Phytophthora ramorum Phyra78816 D 0.818
Phyra95221 Phytophthora ramorum Phyra95221 I 0.818
Physo143675 Phytophthora sojae Physo143675 I 0.886
Physo143676 Phytophthora sojae Physo143676 I 0.886
PITG_00015 Phytophthora infestans PITG_00015 I 0.886
PITG_11246 Phytophthora infestans PITG_11246 I 0.864