Phyra78816 (Phytophthora ramorum)
Pipsqueak

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF05225 (HTH_psq) IPR007889 Phyra78816 T314000_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Phyra78816
M02437_2.00		 Phytophthora ramorum
NNYRNWACAN
NTGTWNYRNN		 PBM
Weirauch et al.(2014)
pTH7817		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
For this family, TFs with SR scores > 0.778 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M02437_2.00 Pipsqueak 52 91

DNA Binding Domains

Protein ID Domain From To Sequence
Phyra78816 Pipsqueak 310 349

Links

Other Pipsqueak family TFs
Other Phytophthora ramorum TFs

10 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Phyra95221 Phytophthora ramorum Phyra95221 I 1.000
fgenesh_scip_prom.28083.10252 Phytophthora lateralis fgenesh_scip_prom.28083.10252 I 0.974
estExt_fgenesh1_kg.C_140377 Phytophthora capsici estExt_fgenesh1_kg.C_140377 I 0.925
PITG_11246 Phytophthora infestans PITG_11246 I 0.923
Physo143676 Phytophthora sojae Physo143676 I 0.923
Physo143675 Phytophthora sojae Physo143675 I 0.923
fgenesh_scip_prom.46568.1708 Phytophthora kernoviae fgenesh_scip_prom.46568.1708 I 0.897
PITG_00015 Phytophthora infestans PITG_00015 I 0.857
fgenesh_scip_prom.28083.11902 Phytophthora lateralis fgenesh_scip_prom.28083.11902 N 0.821
PITG_00016 Phytophthora infestans PITG_00016 I 0.818