MDOA008247 (Musca domestica)
Pipsqueak

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF05225 (HTH_psq) IPR007889 MDOA008247 T314971_2.00 Vectorbase (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
bab1
M06440_2.00 		Drosophila melanogaster
AAYAWWWATA
TATWAWTRTT		 B1H
Zhu et al.(2011)
bab1_FlyReg_FBgn0004870 		0.978 0.978
bab1
M06441_2.00 		Drosophila melanogaster
KAATTAWATAW
WTATWTAATTM		 B1H
Zhu et al.(2011)
bab1_SANGER_5_FBgn0004870 		0.978 0.978
bab1
M09690_2.00 		Drosophila melanogaster
AHWAYWATAWAHAT
ATDTWTATWRTWDT		 Misc
Kulakovskiy et al.(2009)
bab1 		0.978 0.978
For this family, TFs with SR scores > 0.778 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MDOA008247-PA Pipsqueak 85 130

Links

Other Pipsqueak family TFs
Other Musca domestica TFs

68 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30190.m011131 Ricinus communis 30190.m011131 N
Aquca_013_00407 Aquilegia coerulea Aquca_013_00407 N
SCL28 Arabidopsis thaliana AT1G63100 N
Bostr.22157s0011 Boechera stricta Bostr.22157s0011 N
Cagra.9501s0015 Capsella grandiflora Cagra.9501s0015 N
Carubv10019945m.g Capsella rubella Carubv10019945m.g N
cassava2243.valid.m1 Manihot esculenta cassava2243.valid.m1 N
cassava41178.m1 Manihot esculenta cassava41178.m1 N
Ca_08738 Cicer arietinum Ca_08738 N
Ciclev10019186m.g Citrus clementina Ciclev10019186m.g N
Cla004494 Citrullus lanatus Cla004494 N
Cucsa.041620 Cucumis sativus Cucsa.041620 N
Eucgr.D01917 Eucalyptus grandis Eucgr.D01917 N
evm.TU.supercontig_74.80 Carica papaya evm.TU.supercontig_74.80 N
fgenesh1_pg.C_scaffold_2000170 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2000170 N
gene32389-v1.0-hybrid Fragaria vesca gene32389-v1.0-hybrid N
GLYMA05G03490 Glycine max GLYMA05G03490 N
GLYMA17G14030 Glycine max GLYMA17G14030 N
Gorai.003G162400 Gossypium raimondii Gorai.003G162400 N
Gorai.008G243900 Gossypium raimondii Gorai.008G243900 N
LjSGA_020116.2 Lotus japonicus LjSGA_020116.2 N
Lus10006322.g Linum usitatissimum Lus10006322.g N
Lus10029592.g Linum usitatissimum Lus10029592.g N
MDP0000243351 Malus domestica MDP0000243351 N
MDP0000915100 Malus domestica MDP0000915100 N
mgf018176m Mimulus guttatus mgf018176m N
MTR_4g102790 Medicago truncatula MTR_4g102790 N
orange1.1g005954m.g Citrus sinensis orange1.1g005954m.g N
PGSC0003DMG400003047 Solanum tuberosum PGSC0003DMG400003047 N
PK26305.1 Cannabis sativa PK26305.1 N
Pm023754 Prunus mume Pm023754 N
POPTR_0001s08850 Populus trichocarpa POPTR_0001s08850 N
POPTR_0003s12240 Populus trichocarpa POPTR_0003s12240 N
PRUPE_ppa017030mg Prunus persica PRUPE_ppa017030mg N
SapurV1A.0507s0230 Salix purpurea SapurV1A.0507s0230 N
SapurV1A.1081s0090 Salix purpurea SapurV1A.1081s0090 N
Solyc08g080400.1 Solanum lycopersicum Solyc08g080400.1 N
Thhalv10023324m.g Eutrema salsugineum Thhalv10023324m.g N
VIT_02s0025g04000 Vitis vinifera VIT_02s0025g04000 N