CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Ciclev10019186m.g
(
Citrus clementina
)
GRAS
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03514 (GRAS)
IPR005202
Ciclev10019186m.g
T202401_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Ciclev10019186m
GRAS
285
652
LVRLLTDCVEAIGSRNIPAVNHFIAKLGDVASPRGSPISRLTAYYTEALALRVSRLWPHTFHITPPRDFDRVDDDSGAALRLLNQATPIPKFIHFTANEMLLRAFDGKDRVHIIDFDIKQGLQWPSFFQSLASRPNPPSHVRITGIGESKQELNETGDRLSGFAEALNLPFEFHPVVDRLEDVRLWMLHVKEKESVAVNCIFQLHKTLYSGNGGVLRDFLGLIRSTNPTIVLMAEQEAEHNSPFLETRVSNSLRYYSALFDLIDYCLPLDSPVRIKIEEMFAREVRSIVACEGSDRLERHESFENWRRMMEQGGFRCMGISEREMLQSQMLLKMYSCENYGVKKQGQDGAAVTLSWIDQPLYTVSAWV
Links
Other
GRAS
family TFs
Other
Citrus clementina
TFs
41 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
orange1.1g005954m.g
Citrus sinensis
orange1.1g005954m.g
N
0.975
VIT_02s0025g04000
Vitis vinifera
VIT_02s0025g04000
N
0.841
Pm023754
Prunus mume
Pm023754
N
0.825
cassava41178.m1
Manihot esculenta
cassava41178.m1
N
0.825
PRUPE_ppa017030mg
Prunus persica
PRUPE_ppa017030mg
N
0.822
TCM_016186
Theobroma cacao
TCM_016186
N
0.819
30190.m011131
Ricinus communis
30190.m011131
N
0.816
Gorai.008G243900
Gossypium raimondii
Gorai.008G243900
N
0.814
cassava2243.valid.m1
Manihot esculenta
cassava2243.valid.m1
N
0.805
POPTR_0001s08850
Populus trichocarpa
POPTR_0001s08850
N
0.803
POPTR_0003s12240
Populus trichocarpa
POPTR_0003s12240
N
0.803
gene32389-v1.0-hybrid
Fragaria vesca
gene32389-v1.0-hybrid
N
0.803
MDP0000915100
Malus domestica
MDP0000915100
N
0.795
SapurV1A.1081s0090
Salix purpurea
SapurV1A.1081s0090
N
0.795
evm.TU.supercontig_74.80
Carica papaya
evm.TU.supercontig_74.80
N
0.792
Gorai.003G162400
Gossypium raimondii
Gorai.003G162400
N
0.792
SapurV1A.0507s0230
Salix purpurea
SapurV1A.0507s0230
N
0.792
PK26305.1
Cannabis sativa
PK26305.1
N
0.784
Eucgr.D01917
Eucalyptus grandis
Eucgr.D01917
N
0.778
MDP0000243351
Malus domestica
MDP0000243351
N
0.777
Solyc08g080400.1
Solanum lycopersicum
Solyc08g080400.1
N
0.773
Ca_08738
Cicer arietinum
Ca_08738
N
0.773
PGSC0003DMG400003047
Solanum tuberosum
PGSC0003DMG400003047
N
0.770
Lus10029592.g
Linum usitatissimum
Lus10029592.g
N
0.764
LjSGA_020116.2
Lotus japonicus
LjSGA_020116.2
N
0.763
Lus10006322.g
Linum usitatissimum
Lus10006322.g
N
0.756
GLYMA05G03490
Glycine max
GLYMA05G03490
N
0.754
MTR_4g102790
Medicago truncatula
MTR_4g102790
N
0.754
GLYMA17G14030
Glycine max
GLYMA17G14030
N
0.738
SCL28
Arabidopsis thaliana
AT1G63100
N
0.734
Cucsa.041620
Cucumis sativus
Cucsa.041620
N
0.734
Thhalv10023324m.g
Eutrema salsugineum
Thhalv10023324m.g
N
0.734
Bostr.22157s0011
Boechera stricta
Bostr.22157s0011
N
0.733
Cla004494
Citrullus lanatus
Cla004494
N
0.732
fgenesh1_pg.C_scaffold_2000170
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_2000170
N
0.730
Carubv10019945m.g
Capsella rubella
Carubv10019945m.g
N
0.730
Cagra.9501s0015
Capsella grandiflora
Cagra.9501s0015
N
0.727
Bra026999
Brassica rapa
Bra026999
N
0.718
Bo00795s120
Brassica oleracea
Bo00795s120
N
0.712
Aquca_013_00407
Aquilegia coerulea
Aquca_013_00407
N
0.712
Bra027620
Brassica rapa
Bra027620
N
0.705