CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pvit_10466
(
Pogona vitticeps
)
Rel
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00554 (RHD_DNA_bind)
IPR011539
Pvit_10466
T317818_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Rela
M08039_2.00
Mus musculus
DGGRVTTTCCM
KGGAAABYCCH
ChIP-seq
Chen et al.(2011)
SRP001843_p65_Input_LPSstim
0.731
0.731
Rela
M08038_2.00
Mus musculus
HHYYYCYYNYHYYYNHYYYYCYWNNSYTBY
RVARSNNWRGRRRRDNRRRDRNRRGRRRDD
ChIP-seq
Chen et al.(2011)
SRP001843_p65_Input
0.731
0.731
Rela
M09355_2.00
Mus musculus
KGGRVTTYCCM
KGGRAABYCCM
Misc
Kulakovskiy et al.(2013)
TF65_MOUSE.H11MO.0.A
0.731
0.731
RELA
M02711_2.00
Homo sapiens
SGGRVTTTCC
GGAAABYCCS
SELEX
Mathelier et al.(2014)
MA0107.1
0.713
0.713
RELA
M07999_2.00
Homo sapiens
DGGGRMTTTCCMVN
NBKGGAAAKYCCCH
ChIP-seq
Gerstein et al.(2012)
GM10847_NFKB_Stanford
0.713
0.713
RELA
M08000_2.00
Homo sapiens
NDGGGRMWTTCCHN
NDGGAAWKYCCCHN
ChIP-seq
Gerstein et al.(2012)
GM12878_NFKB_Stanford
0.713
0.713
RELA
M08001_2.00
Homo sapiens
NDGGGRMTTTCCMVN
NBKGGAAAKYCCCHN
ChIP-seq
Gerstein et al.(2012)
GM12891_NFKB_Stanford
0.713
0.713
RELA
M08002_2.00
Homo sapiens
DGGGRHTTTCCMVNN
NNBKGGAAADYCCCH
ChIP-seq
Gerstein et al.(2012)
GM12892_NFKB_Stanford
0.713
0.713
RELA
M08003_2.00
Homo sapiens
DGGGRVTTTCCHVN
NBDGGAAABYCCCH
ChIP-seq
Gerstein et al.(2012)
GM15510_NFKB_Stanford
0.713
0.713
RELA
M08004_2.00
Homo sapiens
NDGGGRMTTTCCMNN
NNKGGAAAKYCCCHN
ChIP-seq
Gerstein et al.(2012)
GM18505_NFKB_Stanford
0.713
0.713
RELA
M08005_2.00
Homo sapiens
NDGGGRHTTTCCMVN
NBKGGAAADYCCCHN
ChIP-seq
Gerstein et al.(2012)
GM18526_NFKB_Stanford
0.713
0.713
RELA
M08006_2.00
Homo sapiens
GGGRVTTTCCM
KGGAAABYCCC
ChIP-seq
Gerstein et al.(2012)
GM18951_NFKB_Stanford
0.713
0.713
RELA
M08007_2.00
Homo sapiens
DGGGRMTTTCCMV
BKGGAAAKYCCCH
ChIP-seq
Gerstein et al.(2012)
GM19099_NFKB_Stanford
0.713
0.713
RELA
M08008_2.00
Homo sapiens
DGGGRMTTTCCMNNN
NNNKGGAAAKYCCCH
ChIP-seq
Gerstein et al.(2012)
GM19193_NFKB_Stanford
0.713
0.713
RELA
M09351_2.00
Homo sapiens
NWGGGRHWTTCCMV
BKGGAAWDYCCCWN
Misc
Kulakovskiy et al.(2013)
TF65_HUMAN.H11MO.0.A
0.713
0.713
RELA
M09626_2.00
Homo sapiens
DGGGRVWTTCCM
KGGAAWBYCCCH
Misc
Heinz et al.(2010)
GM12787-p65_GSE19485
0.713
0.713
RELA
M11237_2.00
Homo sapiens
BGGRVTTTCC
GGAAABYCCV
Transfac
Matys et al.(2006)
V$NFKAPPAB65_01
0.713
0.713
RELA
M11238_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$RELA_02
0.713
0.713
RELA
M11239_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$RELA_03
0.713
0.713
RELA
M11240_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$RELA_04
0.713
0.713
RELA
M11241_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$RELA_05
0.713
0.713
RELA
M11242_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$RELA_Q6
0.713
0.713
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pvit_10466
Rel
24
190
AEIIEQPKQRGMRFRYQCEGRLAGSIPGERSTDTTKTHPTIKIHNYVGPGKVRISLVTKESPYRPHPHDLVGKDCREGYYEAELSPERSIHSFQNLGIQCVRKRDLDKAVARRLETANNPFNVSAEELKGDYDLNAVRLCFQVWIRDAGSSRLVQLPLVVSQPIYDN
Links
Other
Rel
family TFs
Other
Pogona vitticeps
TFs
37 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy