ENSFALG00000010929 (Ficedula albicollis)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02257 (RFX_DNA_binding) IPR003150 ENSFALG00000010929 T318233_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RFX5
M03458_2.00 		Homo sapiens
BGTTRCYATRGYAACV
BGTTRCYATRGYAACV		 SELEX
Jolma et al.(2013)
RFX5_1 		0.762 0.848
RFX5
M03459_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_2 		0.762 0.848
RFX5
M03460_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_3 		0.762 0.848
RFX5
M05725_2.00 		Homo sapiens
BGTTRCYANGBGTTGCYRN
NYRGCAACVCNTRGYAACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_1 		0.762 0.848
RFX5
M05726_2.00 		Homo sapiens
NYRVYAACSGTTRCYAN
NTRGYAACSGTTRBYRN		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_2 		0.762 0.848
RFX5
M08009_2.00 		Homo sapiens
KCRBYDGTTRCYRRG
CYYRGYAACHRVYGM		 ChIP-seq
Gerstein et al.(2012)
GM12878_RFX5_Stanford 		0.762 0.848
RFX5
M08010_2.00 		Homo sapiens
DBVBYDGTTGCYRGGBVRR
YYBVCCYRGCAACHRVBVH		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_RFX5_Stanford 		0.762 0.848
RFX5
M08011_2.00 		Homo sapiens
TCVBYDGTTDCYRDG
CHYRGHAACHRVBGA		 ChIP-seq
Gerstein et al.(2012)
HeLa-S3_RFX5_Stanford 		0.762 0.848
RFX5
M08012_2.00 		Homo sapiens
YDGTTRCYRKGBVRV
BYBVCMYRGYAACHR		 ChIP-seq
Gerstein et al.(2012)
HepG2_RFX5_Stanford 		0.762 0.848
RFX5
M09364_2.00 		Homo sapiens
VNNVBYDGTTGCYRKGNVRV
BYBNCMYRGCAACHRVBNNB		 Misc
Kulakovskiy et al.(2013)
RFX5_HUMAN.H11MO.0.A 		0.762 0.848
RFX5
M09629_2.00 		Homo sapiens
NDGTTRCYADGV
BCHTRGYAACHN		 Misc
Heinz et al.(2010)
GM12878-Rfx5_GSE31477 		0.762 0.848
RFX5
M11249_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_03 		0.762 0.848
RFX5
M11250_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_05 		0.762 0.848
RFX5
M05727_2.00 		Homo sapiens
BGTYRYYRNGBGTTGYYRN
NYRRCAACVCNYRRYRACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_1 		0.762 0.848
RFX5
M05728_2.00 		Homo sapiens
NTRGYAASSGTYRBYRN
NYRVYRACSSTTRCYAN		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_2 		0.762 0.848
Rfx7
M00823_2.00 		Mus musculus
GTYRCYRNSB
VSNYRGYRAC		 PBM
Weirauch et al.(2013)
pTH3516 		0.720 0.696
Rfx7
M00187_2.00 		Mus musculus
BGTHDYYRNN
NNYRRHDACV		 PBM
Badis et al.(2009)
Rfxdc2_3516 		0.720 0.696
RFX7
M05729_2.00 		Homo sapiens
BGTTRCYRY
RYRGYAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_HT-SELEX 		0.720 0.696
RFX7
M05730_2.00 		Homo sapiens
BGTTGCYRB
VYRGCAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_Methyl-HT-SELEX 		0.720 0.696
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSFALP00000011408 RFX 89 168

Links

Other RFX family TFs
Other Ficedula albicollis TFs

226 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL011092 Aedes aegypti AAEL011092 N
BOTBODRAFT_148481 Botryobasidium botryosum BOTBODRAFT_148481 N
CC1G_01421 Coprinopsis cinerea CC1G_01421 I
CERSUDRAFT_111018 Ceriporiopsis subvermispora CERSUDRAFT_111018 I
CPIJ009184 Culex quinquefasciatus CPIJ009184 N
CpipJ_CPIJ009184 Culex pipiens CpipJ_CPIJ009184 N
gww2.2.61.1 Phanerochaete chrysosporium gww2.2.61.1 I
JAAARDRAFT_201792 Jaapia argillacea JAAARDRAFT_201792 I
L798_11923 Zootermopsis nevadensis L798_11923 N
M407DRAFT_222108 Tulasnella calospora M407DRAFT_222108 I
M407DRAFT_222112 Tulasnella calospora M407DRAFT_222112 I
Moror_15123 Moniliophthora roreri Moror_15123 N
MPER_01082 Moniliophthora perniciosa MPER_01082 N
PAXRUDRAFT_826282 Paxillus rubicundulus PAXRUDRAFT_826282 I
PHACADRAFT_181728 Phanerochaete carnosa PHACADRAFT_181728 I
PHLGIDRAFT_35021 Phlebiopsis gigantea PHLGIDRAFT_35021 I
PILCRDRAFT_827743 Piloderma croceum PILCRDRAFT_827743 I
SERLA73DRAFT_159163 Serpula lacrymans SERLA73DRAFT_159163 I