FIBRA_04592 (Fibroporia radiculosa)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02257 (RFX_DNA_binding) IPR003150 FIBRA_04592 T318608_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RFX1
M00066_2.00 		Saccharomyces cerevisiae
NSGTTGCYAN
NTRGCAACSN		 PBM
Badis et al.(2008)
RFX1_4537 		0.653 0.430
RFX1
M07494_2.00 		Saccharomyces cerevisiae
BGTTRCYA
TRGYAACV		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0365.1 		0.653 0.430
RFX1
M08600_2.00 		Saccharomyces cerevisiae
CGTYRBYAYRGYWACM
KGTWRCYRTRVYRACG		 Misc
DeBoer et al.(2011)
YLR176C_1478 		0.653 0.430
RFX1
M08601_2.00 		Saccharomyces cerevisiae
BGTTRCYA
TRGYAACV		 Misc
DeBoer et al.(2011)
YLR176C_496 		0.653 0.430
RFX1
M11251_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$RFX1_02 		0.653 0.430
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
CCM02491 RFX 214 292

Links

Other RFX family TFs
Other Fibroporia radiculosa TFs

154 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29646.m001068 Ricinus communis 29646.m001068 I
30068.m002661 Ricinus communis 30068.m002661 I
AMTR_s00048p00108400 Amborella trichopoda AMTR_s00048p00108400 I
AMTR_s00059p00094730 Amborella trichopoda AMTR_s00059p00094730 I
Aquca_002_01218 Aquilegia coerulea Aquca_002_01218 I
BZIP68 Arabidopsis thaliana AT1G32150 D
BZIP16 Arabidopsis thaliana AT2G35530 D
GBF1 Arabidopsis thaliana AT4G36730 D
BGIOSGA007448 Oryza indica BGIOSGA007448 I
BGIOSGA025382 Oryza indica BGIOSGA025382 I
BGIOSGA036419 Oryza indica BGIOSGA036419 I
Bo1g005460 Brassica oleracea Bo1g005460 I
Bo4g038560 Brassica oleracea Bo4g038560 I
Bo4g183320 Brassica oleracea Bo4g183320 I
Bostr.23794s0549 Boechera stricta Bostr.23794s0549 I
Bostr.3359s0141 Boechera stricta Bostr.3359s0141 I
Bostr.7867s1529 Boechera stricta Bostr.7867s1529 I
Bra005335 Brassica rapa Bra005335 I
Bra010572 Brassica rapa Bra010572 I
Bra011701 Brassica rapa Bra011701 I
BRADI1G54180 Brachypodium distachyon BRADI1G54180 I
BRADI4G39630 Brachypodium distachyon BRADI4G39630 I
Cagra.0993s0063 Capsella grandiflora Cagra.0993s0063 I
Cagra.3359s0011 Capsella grandiflora Cagra.3359s0011 I
Cagra.5996s0003 Capsella grandiflora Cagra.5996s0003 I
Carubv10005287m.g Capsella rubella Carubv10005287m.g I
cassava11837.valid.m1 Manihot esculenta cassava11837.valid.m1 I
cassava37043.valid.m1 Manihot esculenta cassava37043.valid.m1 I
cassava45491.m1 Manihot esculenta cassava45491.m1 I
Ca_01293 Cicer arietinum Ca_01293 I
Ca_11455 Cicer arietinum Ca_11455 I
Ca_15839 Cicer arietinum Ca_15839 I
chr1.CM0579.280.nd Lotus japonicus chr1.CM0579.280.nd I
chr2.LjT41P23.50.nc Lotus japonicus chr2.LjT41P23.50.nc I
Ciclev10001333m.g Citrus clementina Ciclev10001333m.g I
Ciclev10025963m.g Citrus clementina Ciclev10025963m.g I
Cla008988 Citrullus lanatus Cla008988 I
Cla014415 Citrullus lanatus Cla014415 I
Cla016502 Citrullus lanatus Cla016502 I
Cucsa.104970 Cucumis sativus Cucsa.104970 I
Cucsa.312800 Cucumis sativus Cucsa.312800 I
Cucsa.322110 Cucumis sativus Cucsa.322110 I
estExt_fgenesh1_pg.C_10522 Micromonas pusilla estExt_fgenesh1_pg.C_10522 I
estExt_fgenesh2_pg.C_Chr_020452 Micromonas sp RCC299 estExt_fgenesh2_pg.C_Chr_020452 I
Eucgr.E00078 Eucalyptus grandis Eucgr.E00078 I
Eucgr.E00223 Eucalyptus grandis Eucgr.E00223 I
Eucgr.H01256 Eucalyptus grandis Eucgr.H01256 I
evm.TU.supercontig_158.7 Carica papaya evm.TU.supercontig_158.7 I
evm.TU.supercontig_2741.1 Carica papaya evm.TU.supercontig_2741.1 I
F775_32205 Aegilops tauschii F775_32205 I
bZIP68 Arabidopsis lyrata fgenesh2_kg.1__3350__AT1G32150.1 I
fgeneshCV_pg.C_scaffold_12000127 Chlorella vulgaris fgeneshCV_pg.C_scaffold_12000127 I
gene13716-v1.0-hybrid Fragaria vesca gene13716-v1.0-hybrid I
gene29546-v1.0-hybrid Fragaria vesca gene29546-v1.0-hybrid I
Genemark1.5055_g Coccomyxa subellipsoidea C169 Genemark1.5055_g I
GLYMA01G01740 Glycine max GLYMA01G01740 I
GLYMA01G38381 Glycine max GLYMA01G38381 I
GLYMA02G06550 Glycine max GLYMA02G06550 I
GLYMA08G34280 Glycine max GLYMA08G34280 I
GLYMA09G34170 Glycine max GLYMA09G34170 I
GLYMA16G15810 Glycine max GLYMA16G15810 I
GLYMA16G25600 Glycine max GLYMA16G25600 I
Gorai.003G185700 Gossypium raimondii Gorai.003G185700 I
Gorai.004G181900 Gossypium raimondii Gorai.004G181900 I
Gorai.007G205700 Gossypium raimondii Gorai.007G205700 I
Gorai.008G068900 Gossypium raimondii Gorai.008G068900 I
GRMZM2G019106 Zea mays GRMZM2G019106 I
GRMZM2G074373 Zea mays GRMZM2G074373 I
GRMZM2G088140 Zea mays GRMZM2G088140 I
GRMZM2G095078 Zea mays GRMZM2G095078 I
GRMZM2G153144 Zea mays GRMZM2G153144 I
GRMZM2G171370 Zea mays GRMZM2G171370 I
GSMUA_Achr4G04530_001 Musa acuminata GSMUA_Achr4G04530_001 I
GSMUA_Achr4G11610_001 Musa acuminata GSMUA_Achr4G11610_001 I
GSMUA_Achr4G18980_001 Musa acuminata GSMUA_Achr4G18980_001 I
GSMUA_Achr4G33130_001 Musa acuminata GSMUA_Achr4G33130_001 I
GSMUA_Achr5G14150_001 Musa acuminata GSMUA_Achr5G14150_001 I
gw1.27.125.1 Physcomitrella patens gw1.27.125.1 I
gw1.3.298.1 Physcomitrella patens gw1.3.298.1 I
gw1.33.173.1 Physcomitrella patens gw1.33.173.1 I
gw2.11.550.1 Micromonas sp RCC299 gw2.11.550.1 I
HBP1A_WHEAT Triticum aestivum HBP1A_WHEAT D
LjSGA_036158.1 Lotus japonicus LjSGA_036158.1 I
LPERR07G06120 Leersia perrieri LPERR07G06120 I
LPERR12G05920 Leersia perrieri LPERR12G05920 I
Lus10003034.g Linum usitatissimum Lus10003034.g I
Lus10005146.g Linum usitatissimum Lus10005146.g I
Lus10014324.g Linum usitatissimum Lus10014324.g I
Lus10026033.g Linum usitatissimum Lus10026033.g I
MDP0000138052 Malus domestica MDP0000138052 I
MDP0000185553 Malus domestica MDP0000185553 I
MDP0000231274 Malus domestica MDP0000231274 I
MDP0000286846 Malus domestica MDP0000286846 I
MDP0000493795 Malus domestica MDP0000493795 I
MDP0000545420 Malus domestica MDP0000545420 I
mgf000639m Mimulus guttatus mgf000639m I
mgf005151m Mimulus guttatus mgf005151m I
mgf008195m Mimulus guttatus mgf008195m I
mgf008605m Mimulus guttatus mgf008605m I
mgf013375m Mimulus guttatus mgf013375m I
mgf014804m Mimulus guttatus mgf014804m I
MLOC_63066 Hordeum vulgare MLOC_63066 I
MLOC_81641 Hordeum vulgare MLOC_81641 I
MTR_5g028850 Medicago truncatula MTR_5g028850 I
MTR_7g116890 Medicago truncatula MTR_7g116890 I
MTR_8g070820 Medicago truncatula MTR_8g070820 I
MTR_8g077950 Medicago truncatula MTR_8g077950 I
OB02G12150 Oryza brachyantha OB02G12150 I
OB07G15280 Oryza brachyantha OB07G15280 I
OB12G16310 Oryza brachyantha OB12G16310 I
OBART07G07070 Oryza barthii OBART07G07070 I
OBART12G06770 Oryza barthii OBART12G06770 I
OGLUM07G06770 Oryza glumaepatula OGLUM07G06770 I
OGLUM12G08090 Oryza glumaepatula OGLUM12G08090 I
OLONG_021599 Oryza longistaminata OLONG_021599 I
OLONG_021967 Oryza longistaminata OLONG_021967 I
OMERI07G05820 Oryza meridionalis OMERI07G05820 I
OMERI12G04560 Oryza meridionalis OMERI12G04560 I
ONIVA02G02170 Oryza nivara ONIVA02G02170 I
ONIVA07G05320 Oryza nivara ONIVA07G05320 I
ONIVA12G06500 Oryza nivara ONIVA12G06500 I
OPUNC02G01690 Oryza punctata OPUNC02G01690 I
OPUNC07G06790 Oryza punctata OPUNC07G06790 I
OPUNC12G06450 Oryza punctata OPUNC12G06450 I
orange1.1g018605m.g Citrus sinensis orange1.1g018605m.g I
orange1.1g036551m.g Citrus sinensis orange1.1g036551m.g I
ORGLA02G0021500 Oryza glaberrima ORGLA02G0021500 I
ORGLA12G0063500 Oryza glaberrima ORGLA12G0063500 I
ORUFI07G07050 Oryza rufipogon ORUFI07G07050 I
ORUFI12G07600 Oryza rufipogon ORUFI12G07600 I
OS02G0128200 Oryza sativa OS02G0128200 I
OS07G0209800 Oryza sativa OS07G0209800 I
Pavir.Aa03436 Panicum virgatum Pavir.Aa03436 I
Pavir.Ab00132 Panicum virgatum Pavir.Ab00132 I
Pavir.Ba03287 Panicum virgatum Pavir.Ba03287 I
Pavir.Bb00931 Panicum virgatum Pavir.Bb00931 I
Pavir.Ca00403 Panicum virgatum Pavir.Ca00403 I
Pavir.Cb01814 Panicum virgatum Pavir.Cb01814 I
PDK_20s1310372g001 Phoenix dactylifera PDK_20s1310372g001 I
PDK_20s1348391g002 Phoenix dactylifera PDK_20s1348391g002 I
PDK_20s1368181g001 Phoenix dactylifera PDK_20s1368181g001 I
PDK_20s1372692g002 Phoenix dactylifera PDK_20s1372692g002 I
PDK_20s1708971g001 Phoenix dactylifera PDK_20s1708971g001 I
PGSC0003DMG400012660 Solanum tuberosum PGSC0003DMG400012660 I
PGSC0003DMG400018469 Solanum tuberosum PGSC0003DMG400018469 I
PGSC0003DMG400033876 Solanum tuberosum PGSC0003DMG400033876 I
PK23964.1 Cannabis sativa PK23964.1 D
Pm018422 Prunus mume Pm018422 I
Pm023132 Prunus mume Pm023132 I
Pm026586 Prunus mume Pm026586 I
POPTR_0001s01840 Populus trichocarpa POPTR_0001s01840 I
POPTR_0002s16870 Populus trichocarpa POPTR_0002s16870 I
POPTR_0003s09630 Populus trichocarpa POPTR_0003s09630 I
POPTR_0005s12750 Populus trichocarpa POPTR_0005s12750 I
POPTR_0007s12460 Populus trichocarpa POPTR_0007s12460 I
PRUPE_ppa006173mg Prunus persica PRUPE_ppa006173mg I
PRUPE_ppa006484mg Prunus persica PRUPE_ppa006484mg I
PRUPE_ppa008024mg Prunus persica PRUPE_ppa008024mg I
SapurV1A.0013s0770 Salix purpurea SapurV1A.0013s0770 I
SapurV1A.0051s0250 Salix purpurea SapurV1A.0051s0250 I
SapurV1A.0063s0130 Salix purpurea SapurV1A.0063s0130 I
SapurV1A.0255s0070 Salix purpurea SapurV1A.0255s0070 I
SapurV1A.0817s0110 Salix purpurea SapurV1A.0817s0110 I
Sb02g006350 Sorghum bicolor Sb02g006350 I
Sb04g002360 Sorghum bicolor Sb04g002360 I
Sb08g008300 Sorghum bicolor Sb08g008300 I
GBF1 Arabidopsis lyrata scaffold_700433.1 I
SELMODRAFT_125734 Selaginella moellendorffii SELMODRAFT_125734 I
SELMODRAFT_129391 Selaginella moellendorffii SELMODRAFT_129391 I
SELMODRAFT_135978 Selaginella moellendorffii SELMODRAFT_135978 I
Si017637m.g Setaria italica Si017637m.g I
Si022325m.g Setaria italica Si022325m.g I
Si030123m.g Setaria italica Si030123m.g I
Solyc02g062950.2 Solanum lycopersicum Solyc02g062950.2 I
Solyc02g085610.2 Solanum lycopersicum Solyc02g085610.2 I
Solyc05g050220.2 Solanum lycopersicum Solyc05g050220.2 I
Solyc08g005290.2 Solanum lycopersicum Solyc08g005290.2 I
Solyc08g076100.2 Solanum lycopersicum Solyc08g076100.2 I
TCM_000436 Theobroma cacao TCM_000436 I
TCM_016606 Theobroma cacao TCM_016606 I
Thhalv10007879m.g Eutrema salsugineum Thhalv10007879m.g I
Thhalv10016740m.g Eutrema salsugineum Thhalv10016740m.g I
Thhalv10025733m.g Eutrema salsugineum Thhalv10025733m.g I
Traes_2BL_245DDBC7B Triticum aestivum Traes_2BL_245DDBC7B I
Traes_5AS_3A85F1C2C Triticum aestivum Traes_5AS_3A85F1C2C I
Traes_5BL_A5532B750 Triticum aestivum Traes_5BL_A5532B750 I
Traes_5BS_A5532B750 Triticum aestivum Traes_5BS_A5532B750 I
Traes_5DL_C794C1EEA Triticum aestivum Traes_5DL_C794C1EEA I
Traes_6BS_05264DAEA Triticum aestivum Traes_6BS_05264DAEA I
TRIUR3_18117 Triticum urartu TRIUR3_18117 I
TRIUR3_31142 Triticum urartu TRIUR3_31142 I
TRIUR3_34165 Triticum urartu TRIUR3_34165 I
VIT_02s0012g02250 Vitis vinifera VIT_02s0012g02250 I
GBF1 Vitis vinifera VIT_04s0023g01360 I
VIT_18s0001g12120 Vitis vinifera VIT_18s0001g12120 I