RUNX1 (Homo sapiens)
Runt

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00853 (Runt) IPR013524 ENSG00000159216 T319384_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RUNX1
M09371_2.00		 Homo sapiens
NWAACCACARV
BYTGTGGTTWN		 Misc
Kulakovskiy et al.(2013)
RUNX1_HUMAN.H11MO.0.A		 (Direct) (Direct)
RUNX1
M09631_2.00		 Homo sapiens
VCCACWTCCTBY
RVAGGAWGTGGB		 Misc
Heinz et al.(2010)
Jurkat-RUNX1_GSE17954		 (Direct) (Direct)
RUNX1
M09632_2.00		 Homo sapiens
HAACCACADV
BHTGTGGTTD		 Misc
Heinz et al.(2010)
Jurkat-RUNX1_GSE29180		 (Direct) (Direct)
RUNX1
M11258_2.00		 Homo sapiens
ACCRCA
TGYGGT		 Transfac
Matys et al.(2006)
V$AML1_01		 (Direct) (Direct)
RUNX1
M11259_2.00		 Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4_01		 (Direct) (Direct)
RUNX1
M11260_2.00		 Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4_02		 (Direct) (Direct)
RUNX1
M11261_2.00		 Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4		 (Direct) (Direct)
RUNX1
M11262_2.00		 Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q5		 (Direct) (Direct)
RUNX1
M11263_2.00		 Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q6		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Runx1
M08163_2.00 		Mus musculus
HRRCCACARVN
NBYTGTGGYYD		 ChIP-seq
Mathelier et al.(2014)
MA0002.2 		1.000 1.000
Runx1
M09372_2.00 		Mus musculus
VWRACCACARVV
BBYTGTGGTYWB		 Misc
Kulakovskiy et al.(2013)
RUNX1_MOUSE.H11MO.0.A 		1.000 1.000
Runx1
M09633_2.00 		Mus musculus
NWAACCACAR
YTGTGGTTWN		 Misc
Heinz et al.(2010)
HPC7-Runx1_GSE22178 		0.985 0.985
RUNX3
M03464_2.00 		Homo sapiens
HRACCGCAAACCRCAN
NTGYGGTTTGCGGTYD		 SELEX
Jolma et al.(2013)
RUNX3_1 		0.915 0.915
RUNX3
M03465_2.00 		Homo sapiens
WAACCRCARN
NYTGYGGTTW		 SELEX
Jolma et al.(2013)
RUNX3_2 		0.931 0.931
RUNX3
M03466_2.00 		Homo sapiens
HDACCRCADWAACCRCRN
NYGYGGTTWHTGYGGTHD		 SELEX
Jolma et al.(2013)
RUNX3_3 		0.931 0.931
RUNX3
M03467_2.00 		Homo sapiens
HRACCRCAAH
DTTGYGGTYD		 SELEX
Jolma et al.(2013)
RUNX3_4 		0.931 0.931
RUNX3
M02751_2.00 		Homo sapiens
WACCRCAM
KTGYGGTW		 SELEX
Jolma et al.(2010)
RUNX3_monomer 		0.915 0.915
RUNX3
M05731_2.00 		Homo sapiens
YWAACCGCAAAAACCGCARV
BYTGCGGTTTTTGCGGTTWR		 SELEX
Yin et al.(2017)
RUNX3_FL_HT-SELEX 		0.915 0.915
RUNX3
M09369_2.00 		Homo sapiens
HAACCACARN
NYTGTGGTTD		 Misc
Kulakovskiy et al.(2013)
RUNX3_HUMAN.H11MO.0.A 		0.931 0.931
Runx3
M09374_2.00 		Mus musculus
NHRACCACARVN
NBYTGTGGTYDN		 Misc
Kulakovskiy et al.(2013)
RUNX3_MOUSE.H11MO.0.A 		0.931 0.931
RUNX3
M11252_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q3_01 		0.931 0.931
RUNX3
M11253_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q3 		0.915 0.915
RUNX3
M11254_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q4 		0.931 0.931
RUNX3
M05732_2.00 		Homo sapiens
HWAACCACRAAAACCACRARN
NYTYGTGGTTTTYGTGGTTWD		 SELEX
Yin et al.(2017)
RUNX3_FL_Methyl-HT-SELEX 		0.931 0.931
Runx2
M01307_2.00 		Mus musculus
NHDACCRCAN
NTGYGGTHDN		 PBM
Lambert et al.(2019)
pTH9764 		0.923 0.923
RUNX2
M03468_2.00 		Homo sapiens
HRACCGCAAACCRCRD
HYGYGGTTTGCGGTYD		 SELEX
Jolma et al.(2013)
RUNX2_1 		0.923 0.923
RUNX2
M03469_2.00 		Homo sapiens
HRACCRCADWWACCRCAD
HTGYGGTWWHTGYGGTYD		 SELEX
Jolma et al.(2013)
RUNX2_2 		0.908 0.908
RUNX2
M03470_2.00 		Homo sapiens
WAACCRCAR
YTGYGGTTW		 SELEX
Jolma et al.(2013)
RUNX2_3 		0.923 0.923
RUNX2
M05733_2.00 		Homo sapiens
NHRACCRCADWAACCRCAVN
NBTGYGGTTWHTGYGGTYDN		 SELEX
Yin et al.(2017)
RUNX2_eDBD_HT-SELEX 		0.908 0.908
RUNX2
M09370_2.00 		Homo sapiens
MMHAACCACAVVMH
DKBBTGTGGTTDKK		 Misc
Kulakovskiy et al.(2013)
RUNX2_HUMAN.H11MO.0.A 		0.923 0.923
Runx2
M09373_2.00 		Mus musculus
VWRACCACARVV
BBYTGTGGTYWB		 Misc
Kulakovskiy et al.(2013)
RUNX2_MOUSE.H11MO.0.A 		0.882 0.882
RUNX2
M09630_2.00 		Homo sapiens
NHVACCACANNN
NNNTGTGGTBDN		 Misc
Heinz et al.(2010)
PCa-RUNX2_GSE33889 		0.923 0.923
RUNX2
M11255_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML3_Q3 		0.923 0.923
RUNX2
M11256_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML3_Q6 		0.923 0.923
RUNX2
M11257_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$OSF2_Q6 		0.908 0.908
RUNX2
M05734_2.00 		Homo sapiens
NWAACCACRAAAACCACRRN
NYYGTGGTTTTYGTGGTTWN		 SELEX
Yin et al.(2017)
RUNX2_eDBD_Methyl-HT-SELEX 		0.882 0.882
lz
M03964_2.00 		Drosophila melanogaster
HRACCGCAAHM
KDTTGCGGTYD		 SELEX
Nitta et al.(2015)
lz_1 		0.731 0.731
lz
M03965_2.00 		Drosophila melanogaster
HVACCRCARWAACCRCAV
BTGYGGTTWYTGYGGTBD		 SELEX
Nitta et al.(2015)
lz_2 		0.731 0.731
lz
M03966_2.00 		Drosophila melanogaster
WRACCRCAWTAACCRCAA
TTGYGGTTAWTGYGGTYW		 SELEX
Nitta et al.(2015)
lz_3 		0.731 0.731
lz
M03967_2.00 		Drosophila melanogaster
HRACCGCAAAACCRCAR
YTGYGGTTTTGCGGTYD		 SELEX
Nitta et al.(2015)
lz_4 		0.731 0.731
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSP00000300305 Runt 78 207
ENSP00000340690 Runt 51 180
ENSP00000351123 Runt 51 180
ENSP00000382182 Runt 66 195
ENSP00000382184 Runt 51 180
ENSP00000388189 Runt 65 140
ENSP00000409227 Runt 78 207

Links

Other Runt family TFs
Other Homo sapiens TFs

356 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29904.m002956 Ricinus communis 29904.m002956 N
30054.m000819 Ricinus communis 30054.m000819 N
30128.m008737 Ricinus communis 30128.m008737 N
AMTR_s00001p00272070 Amborella trichopoda AMTR_s00001p00272070 N
AMTR_s00008p00198780 Amborella trichopoda AMTR_s00008p00198780 N
AMTR_s00089p00043950 Amborella trichopoda AMTR_s00089p00043950 N
Aquca_005_00478 Aquilegia coerulea Aquca_005_00478 N
Aquca_010_00112 Aquilegia coerulea Aquca_010_00112 N
Aquca_034_00130 Aquilegia coerulea Aquca_034_00130 N
AT1G22490 Arabidopsis thaliana AT1G22490 N
BHLH96 Arabidopsis thaliana AT1G72210 N
FAMA Arabidopsis thaliana AT3G24140 N
BGIOSGA012015 Oryza indica BGIOSGA012015 N
BGIOSGA026779 Oryza indica BGIOSGA026779 N
BGIOSGA030936 Oryza indica BGIOSGA030936 N
Bo1g101110 Brassica oleracea Bo1g101110 N
Bo3g082010 Brassica oleracea Bo3g082010 N
Bo5g038570 Brassica oleracea Bo5g038570 N
Bo6g092570 Brassica oleracea Bo6g092570 N
Bo7g037540 Brassica oleracea Bo7g037540 N
Bo7g057920 Brassica oleracea Bo7g057920 N
Bo8g071490 Brassica oleracea Bo8g071490 N
Bostr.10273s0131 Boechera stricta Bostr.10273s0131 N
Bostr.12659s0103 Boechera stricta Bostr.12659s0103 N
Bostr.19424s0222 Boechera stricta Bostr.19424s0222 N
Bra001929 Brassica rapa Bra001929 N
Bra003886 Brassica rapa Bra003886 N
Bra012329 Brassica rapa Bra012329 N
Bra016080 Brassica rapa Bra016080 N
Bra016377 Brassica rapa Bra016377 N
Bra028357 Brassica rapa Bra028357 N
Bra040856 Brassica rapa Bra040856 N
Cagra.0026s0026 Capsella grandiflora Cagra.0026s0026 N
Cagra.0114s0053 Capsella grandiflora Cagra.0114s0053 N
Cagra.4006s0007 Capsella grandiflora Cagra.4006s0007 N
Carubv10011476m.g Capsella rubella Carubv10011476m.g N
Carubv10013821m.g Capsella rubella Carubv10013821m.g N
Carubv10020657m.g Capsella rubella Carubv10020657m.g N
cassava13431.valid.m1 Manihot esculenta cassava13431.valid.m1 N
cassava19507.valid.m1 Manihot esculenta cassava19507.valid.m1 N
cassava22781.valid.m1 Manihot esculenta cassava22781.valid.m1 N
cassava27750.m1 Manihot esculenta cassava27750.m1 N
cassava27856.m1 Manihot esculenta cassava27856.m1 N
cassava31098.valid.m1 Manihot esculenta cassava31098.valid.m1 N
cassava35271.valid.m1 Manihot esculenta cassava35271.valid.m1 N
Ca_01181 Cicer arietinum Ca_01181 N
Ca_12363 Cicer arietinum Ca_12363 N
Ca_16010 Cicer arietinum Ca_16010 N
Ca_28086 Cicer arietinum Ca_28086 N
chr1.CM0544.580.nd Lotus japonicus chr1.CM0544.580.nd N
chr1.LjT16B05.110.nd Lotus japonicus chr1.LjT16B05.110.nd N
chr1.LjT40H13.220.nd Lotus japonicus chr1.LjT40H13.220.nd N
chr5.CM0211.190.nc Lotus japonicus chr5.CM0211.190.nc N
chr6.CM0738.340.nd Lotus japonicus chr6.CM0738.340.nd N
Ciclev10001811m.g Citrus clementina Ciclev10001811m.g N
Ciclev10005031m.g Citrus clementina Ciclev10005031m.g N
Cla005338 Citrullus lanatus Cla005338 N
Cla020173 Citrullus lanatus Cla020173 N
Cla021744 Citrullus lanatus Cla021744 N
Cla022458 Citrullus lanatus Cla022458 N
Cucsa.091670 Cucumis sativus Cucsa.091670 N
Cucsa.160250 Cucumis sativus Cucsa.160250 N
Cucsa.163550 Cucumis sativus Cucsa.163550 N
Cucsa.256420 Cucumis sativus Cucsa.256420 N
Eucgr.B00048 Eucalyptus grandis Eucgr.B00048 N
Eucgr.E00273 Eucalyptus grandis Eucgr.E00273 N
Eucgr.H04468 Eucalyptus grandis Eucgr.H04468 N
evm.TU.supercontig_36.191 Carica papaya evm.TU.supercontig_36.191 N
evm.TU.supercontig_48.15 Carica papaya evm.TU.supercontig_48.15 N
evm.TU.supercontig_59.132 Carica papaya evm.TU.supercontig_59.132 N
fgenesh1_pg.C_scaffold_1002057 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1002057 N
gene02199-v1.0-hybrid Fragaria vesca gene02199-v1.0-hybrid N
gene12030-v1.0-hybrid Fragaria vesca gene12030-v1.0-hybrid N
gene22289-v1.0-hybrid Fragaria vesca gene22289-v1.0-hybrid N
GLYMA01G23230 Glycine max GLYMA01G23230 N
GLYMA02G14290 Glycine max GLYMA02G14290 N
GLYMA02G37313 Glycine max GLYMA02G37313 N
GLYMA03G39990 Glycine max GLYMA03G39990 N
GLYMA04G10630 Glycine max GLYMA04G10630 N
GLYMA06G10470 Glycine max GLYMA06G10470 N
GLYMA06G35330 Glycine max GLYMA06G35330 N
GLYMA08G36590 Glycine max GLYMA08G36590 N
GLYMA10G29760 Glycine max GLYMA10G29760 N
GLYMA13G08740 Glycine max GLYMA13G08740 N
GLYMA14G35560 Glycine max GLYMA14G35560 N
GLYMA19G42520 Glycine max GLYMA19G42520 N
GLYMA20G37550 Glycine max GLYMA20G37550 N
Gorai.006G217200 Gossypium raimondii Gorai.006G217200 N
Gorai.008G225800 Gossypium raimondii Gorai.008G225800 N
Gorai.009G233000 Gossypium raimondii Gorai.009G233000 N
Gorai.011G159100 Gossypium raimondii Gorai.011G159100 N
GRMZM2G082586 Zea mays GRMZM2G082586 N
GSMUA_Achr10G30300_001 Musa acuminata GSMUA_Achr10G30300_001 N
GSMUA_Achr3G06660_001 Musa acuminata GSMUA_Achr3G06660_001 N
GSMUA_Achr5G05450_001 Musa acuminata GSMUA_Achr5G05450_001 N
GSMUA_Achr5G17900_001 Musa acuminata GSMUA_Achr5G17900_001 N
GSMUA_Achr6G10290_001 Musa acuminata GSMUA_Achr6G10290_001 N
GSMUA_Achr7G12790_001 Musa acuminata GSMUA_Achr7G12790_001 N
GSMUA_Achr8G17650_001 Musa acuminata GSMUA_Achr8G17650_001 N
LPERR03G05820 Leersia perrieri LPERR03G05820 N
LPERR08G15350 Leersia perrieri LPERR08G15350 N
Lus10000332.g Linum usitatissimum Lus10000332.g N
Lus10016680.g Linum usitatissimum Lus10016680.g N
Lus10029950.g Linum usitatissimum Lus10029950.g N
MDP0000229007 Malus domestica MDP0000229007 N
MDP0000267178 Malus domestica MDP0000267178 N
MDP0000646823 Malus domestica MDP0000646823 N
MDP0000672131 Malus domestica MDP0000672131 N
MDP0000944210 Malus domestica MDP0000944210 N
mgf015694m Mimulus guttatus mgf015694m N
MLOC_21759 Hordeum vulgare MLOC_21759 N
MLOC_67417 Hordeum vulgare MLOC_67417 N
MTR_0194s0050 Medicago truncatula MTR_0194s0050 N
MTR_3g099620 Medicago truncatula MTR_3g099620 N
MTR_7g113830 Medicago truncatula MTR_7g113830 N
MTR_8g066770 Medicago truncatula MTR_8g066770 N
OB08G25610 Oryza brachyantha OB08G25610 N
OB09G19960 Oryza brachyantha OB09G19960 N
OBART03G06470 Oryza barthii OBART03G06470 N
OBART08G18480 Oryza barthii OBART08G18480 N
OGLUM03G06480 Oryza glumaepatula OGLUM03G06480 N
OGLUM08G19420 Oryza glumaepatula OGLUM08G19420 N
OLONG_001045 Oryza longistaminata OLONG_001045 N
OMERI03G06350 Oryza meridionalis OMERI03G06350 N
OMERI08G14480 Oryza meridionalis OMERI08G14480 N
OMERI09G10430 Oryza meridionalis OMERI09G10430 N
ONIVA02G06380 Oryza nivara ONIVA02G06380 N
ONIVA08G20580 Oryza nivara ONIVA08G20580 N
ONIVA09G13890 Oryza nivara ONIVA09G13890 N
OPUNC08G16410 Oryza punctata OPUNC08G16410 N
OPUNC09G11790 Oryza punctata OPUNC09G11790 N
orange1.1g014477m.g Citrus sinensis orange1.1g014477m.g N
orange1.1g020210m.g Citrus sinensis orange1.1g020210m.g N
orange1.1g036531m.g Citrus sinensis orange1.1g036531m.g N
ORGLA03G0062600 Oryza glaberrima ORGLA03G0062600 N
ORGLA08G0160400 Oryza glaberrima ORGLA08G0160400 N
ORGLA09G0101900 Oryza glaberrima ORGLA09G0101900 N
ORUFI03G06370 Oryza rufipogon ORUFI03G06370 N
ORUFI09G14410 Oryza rufipogon ORUFI09G14410 N
OS03G0188400 Oryza sativa OS03G0188400 N
OS08G0483900 Oryza sativa OS08G0483900 N
OS09G0468700 Oryza sativa OS09G0468700 N
Pavir.Ba01963 Panicum virgatum Pavir.Ba01963 N
Pavir.Bb02386 Panicum virgatum Pavir.Bb02386 N
Pavir.Fb01787 Panicum virgatum Pavir.Fb01787 N
Pavir.J22933 Panicum virgatum Pavir.J22933 N
PGSC0003DMG400015760 Solanum tuberosum PGSC0003DMG400015760 N
PGSC0003DMG400017540 Solanum tuberosum PGSC0003DMG400017540 N
PGSC0003DMG400028578 Solanum tuberosum PGSC0003DMG400028578 N
PGSC0003DMG400029634 Solanum tuberosum PGSC0003DMG400029634 N
PK04856.1 Cannabis sativa PK04856.1 N
PK14736.1 Cannabis sativa PK14736.1 N
PK18533.1 Cannabis sativa PK18533.1 N
PK21294.1 Cannabis sativa PK21294.1 N
PK28391.1 Cannabis sativa PK28391.1 N
Pm002111 Prunus mume Pm002111 N
Pm003380 Prunus mume Pm003380 N
Pm004489 Prunus mume Pm004489 N
Pm009474 Prunus mume Pm009474 N
Pm023207 Prunus mume Pm023207 N
POPTR_0001s32160 Populus trichocarpa POPTR_0001s32160 N
POPTR_0002s10230 Populus trichocarpa POPTR_0002s10230 N
POPTR_0003s09200 Populus trichocarpa POPTR_0003s09200 N
POPTR_0005s04160 Populus trichocarpa POPTR_0005s04160 N
POPTR_0013s02680 Populus trichocarpa POPTR_0013s02680 N
POPTR_0017s08160 Populus trichocarpa POPTR_0017s08160 N
PRUPE_ppa009461mg Prunus persica PRUPE_ppa009461mg N
PRUPE_ppa011095mg Prunus persica PRUPE_ppa011095mg N
PRUPE_ppa017746mg Prunus persica PRUPE_ppa017746mg N
PRUPE_ppa020429mg Prunus persica PRUPE_ppa020429mg N
PRUPE_ppa020862mg Prunus persica PRUPE_ppa020862mg N
SapurV1A.0092s0130 Salix purpurea SapurV1A.0092s0130 N
SapurV1A.0462s0070 Salix purpurea SapurV1A.0462s0070 N
SapurV1A.0613s0120 Salix purpurea SapurV1A.0613s0120 N
SapurV1A.1055s0160 Salix purpurea SapurV1A.1055s0160 N
SapurV1A.1124s0170 Salix purpurea SapurV1A.1124s0170 N
Sb02g027210 Sorghum bicolor Sb02g027210 N
FMA Arabidopsis lyrata scaffold_302925.1 N
SELMODRAFT_428659 Selaginella moellendorffii SELMODRAFT_428659 N
SELMODRAFT_430716 Selaginella moellendorffii SELMODRAFT_430716 N
Si013925m.g Setaria italica Si013925m.g N
Solyc05g053660.1 Solanum lycopersicum Solyc05g053660.1 N
Solyc08g076820.2 Solanum lycopersicum Solyc08g076820.2 N
Solyc09g091760.1 Solanum lycopersicum Solyc09g091760.1 N
TCM_015694 Theobroma cacao TCM_015694 N
TCM_020336 Theobroma cacao TCM_020336 N
TCM_026599 Theobroma cacao TCM_026599 N
TCM_034439 Theobroma cacao TCM_034439 N
Thhalv10002558m.g Eutrema salsugineum Thhalv10002558m.g N
Thhalv10009836m.g Eutrema salsugineum Thhalv10009836m.g N
Thhalv10018867m.g Eutrema salsugineum Thhalv10018867m.g N
Traes_5BL_DA72CE20D Triticum aestivum Traes_5BL_DA72CE20D N
TRIUR3_09788 Triticum urartu TRIUR3_09788 N
FMA Vitis vinifera VIT_05s0029g00050 N
VIT_07s0191g00240 Vitis vinifera VIT_07s0191g00240 N
VIT_14s0128g00110 Vitis vinifera VIT_14s0128g00110 N
VIT_18s0001g06650 Vitis vinifera VIT_18s0001g06650 N