Pavir.Ba01963 (Panicum virgatum)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Pavir.Ba01963 T050685_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ba01963.1.p bHLH 122 173

Links

Other bHLH family TFs
Other Panicum virgatum TFs

201 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GSMUA_Achr10G30300_001 Musa acuminata GSMUA_Achr10G30300_001 N 0.886
GSMUA_Achr5G05450_001 Musa acuminata GSMUA_Achr5G05450_001 N 0.886
Si013925m.g Setaria italica Si013925m.g N 0.886
TRIUR3_09788 Triticum urartu TRIUR3_09788 N 0.886
GSMUA_Achr7G12790_001 Musa acuminata GSMUA_Achr7G12790_001 N 0.885
AMTR_s00001p00272070 Amborella trichopoda AMTR_s00001p00272070 N 0.883
AMTR_s00089p00043950 Amborella trichopoda AMTR_s00089p00043950 N 0.883
Aquca_010_00112 Aquilegia coerulea Aquca_010_00112 N 0.874
PRUPE_ppa020862mg Prunus persica PRUPE_ppa020862mg N 0.866
Pm002111 Prunus mume Pm002111 N 0.866
MDP0000229007 Malus domestica MDP0000229007 N 0.866
GSMUA_Achr5G17900_001 Musa acuminata GSMUA_Achr5G17900_001 N 0.864
BGIOSGA012015 Oryza indica BGIOSGA012015 N 0.862
GSMUA_Achr6G10290_001 Musa acuminata GSMUA_Achr6G10290_001 N 0.862
LPERR03G05820 Leersia perrieri LPERR03G05820 N 0.862
MLOC_67417 Hordeum vulgare MLOC_67417 N 0.862
OBART03G06470 Oryza barthii OBART03G06470 N 0.862
OGLUM03G06480 Oryza glumaepatula OGLUM03G06480 N 0.862
OLONG_001045 Oryza longistaminata OLONG_001045 N 0.862
OMERI03G06350 Oryza meridionalis OMERI03G06350 N 0.862
ONIVA02G06380 Oryza nivara ONIVA02G06380 N 0.862
ORGLA03G0062600 Oryza glaberrima ORGLA03G0062600 N 0.862
ORUFI03G06370 Oryza rufipogon ORUFI03G06370 N 0.862
OS03G0188400 Oryza sativa OS03G0188400 N 0.862
evm.TU.supercontig_55.64 Carica papaya evm.TU.supercontig_55.64 N 0.862
VIT_07s0191g00240 Vitis vinifera VIT_07s0191g00240 N 0.859
AT1G22490 Arabidopsis thaliana AT1G22490 N 0.856
BHLH96 Arabidopsis thaliana AT1G72210 N 0.856
BGIOSGA030936 Oryza indica BGIOSGA030936 N 0.856
Bo5g038570 Brassica oleracea Bo5g038570 N 0.856
Bo6g092570 Brassica oleracea Bo6g092570 N 0.856
Bo7g057920 Brassica oleracea Bo7g057920 N 0.856
Bo8g071490 Brassica oleracea Bo8g071490 N 0.856
Bra003886 Brassica rapa Bra003886 N 0.856
Bra012329 Brassica rapa Bra012329 N 0.856
Bra016080 Brassica rapa Bra016080 N 0.856
Bra016377 Brassica rapa Bra016377 N 0.856
Bra040856 Brassica rapa Bra040856 N 0.856
fgenesh1_pg.C_scaffold_1002057 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1002057 N 0.856
GLYMA02G37313 Glycine max GLYMA02G37313 N 0.856
GLYMA03G39990 Glycine max GLYMA03G39990 N 0.856
GLYMA04G10630 Glycine max GLYMA04G10630 N 0.856
GLYMA06G10470 Glycine max GLYMA06G10470 N 0.856
GLYMA14G35560 Glycine max GLYMA14G35560 N 0.856
GLYMA19G42520 Glycine max GLYMA19G42520 N 0.856
GLYMA20G37550 Glycine max GLYMA20G37550 N 0.856
GRMZM2G082586 Zea mays GRMZM2G082586 N 0.856
GSMUA_Achr8G17650_001 Musa acuminata GSMUA_Achr8G17650_001 N 0.856
MLOC_21759 Hordeum vulgare MLOC_21759 N 0.856
MTR_1g082480 Medicago truncatula MTR_1g082480 N 0.856
MTR_3g099620 Medicago truncatula MTR_3g099620 N 0.856
MTR_7g113830 Medicago truncatula MTR_7g113830 N 0.856
OB09G19960 Oryza brachyantha OB09G19960 N 0.856
OMERI09G10430 Oryza meridionalis OMERI09G10430 N 0.856
ONIVA09G13890 Oryza nivara ONIVA09G13890 N 0.856
OPUNC09G11790 Oryza punctata OPUNC09G11790 N 0.856
ORGLA09G0101900 Oryza glaberrima ORGLA09G0101900 N 0.856
ORUFI09G14410 Oryza rufipogon ORUFI09G14410 N 0.856
OS09G0468700 Oryza sativa OS09G0468700 N 0.856
PGSC0003DMG400028578 Solanum tuberosum PGSC0003DMG400028578 N 0.856
POPTR_0002s10230 Populus trichocarpa POPTR_0002s10230 N 0.856
POPTR_0005s04160 Populus trichocarpa POPTR_0005s04160 N 0.856
POPTR_0013s02680 Populus trichocarpa POPTR_0013s02680 N 0.856
PRUPE_ppa009461mg Prunus persica PRUPE_ppa009461mg N 0.856
PRUPE_ppa011095mg Prunus persica PRUPE_ppa011095mg N 0.856
Sb02g027210 Sorghum bicolor Sb02g027210 N 0.856
TCM_026599 Theobroma cacao TCM_026599 N 0.856
TCM_034439 Theobroma cacao TCM_034439 N 0.856
Traes_5BL_DA72CE20D Triticum aestivum Traes_5BL_DA72CE20D N 0.856
VIT_14s0128g00110 Vitis vinifera VIT_14s0128g00110 N 0.856
VIT_18s0001g06650 Vitis vinifera VIT_18s0001g06650 N 0.856
Ca_01181 Cicer arietinum Ca_01181 N 0.856
Cla005338 Citrullus lanatus Cla005338 N 0.856
Cla020173 Citrullus lanatus Cla020173 N 0.856
Cla022458 Citrullus lanatus Cla022458 N 0.856
Pm003380 Prunus mume Pm003380 N 0.856
Pm004489 Prunus mume Pm004489 N 0.856
30128.m008737 Ricinus communis 30128.m008737 N 0.856
cassava13431.valid.m1 Manihot esculenta cassava13431.valid.m1 N 0.856
cassava19507.valid.m1 Manihot esculenta cassava19507.valid.m1 N 0.856
cassava22781.valid.m1 Manihot esculenta cassava22781.valid.m1 N 0.856
cassava31098.valid.m1 Manihot esculenta cassava31098.valid.m1 N 0.856
cassava35271.valid.m1 Manihot esculenta cassava35271.valid.m1 N 0.856
Cucsa.091670 Cucumis sativus Cucsa.091670 N 0.856
Cucsa.160250 Cucumis sativus Cucsa.160250 N 0.856
Cucsa.163550 Cucumis sativus Cucsa.163550 N 0.856
Aquca_005_00478 Aquilegia coerulea Aquca_005_00478 N 0.856
Bostr.10273s0131 Boechera stricta Bostr.10273s0131 N 0.856
Bostr.12659s0103 Boechera stricta Bostr.12659s0103 N 0.856
Cagra.0114s0053 Capsella grandiflora Cagra.0114s0053 N 0.856
Cagra.4006s0007 Capsella grandiflora Cagra.4006s0007 N 0.856
Carubv10011476m.g Capsella rubella Carubv10011476m.g N 0.856
Carubv10020657m.g Capsella rubella Carubv10020657m.g N 0.856
Ciclev10001811m.g Citrus clementina Ciclev10001811m.g N 0.856
Eucgr.B00048 Eucalyptus grandis Eucgr.B00048 N 0.856
Eucgr.H04468 Eucalyptus grandis Eucgr.H04468 N 0.856
evm.TU.supercontig_48.15 Carica papaya evm.TU.supercontig_48.15 N 0.856
gene12030-v1.0-hybrid Fragaria vesca gene12030-v1.0-hybrid N 0.856
gene22289-v1.0-hybrid Fragaria vesca gene22289-v1.0-hybrid N 0.856
Lus10000332.g Linum usitatissimum Lus10000332.g N 0.856
Lus10029950.g Linum usitatissimum Lus10029950.g N 0.856
MDP0000267178 Malus domestica MDP0000267178 N 0.856
MDP0000672131 Malus domestica MDP0000672131 N 0.856
MDP0000944210 Malus domestica MDP0000944210 N 0.856
orange1.1g020210m.g Citrus sinensis orange1.1g020210m.g N 0.856
orange1.1g036531m.g Citrus sinensis orange1.1g036531m.g N 0.856
Pavir.Bb02386 Panicum virgatum Pavir.Bb02386 N 0.856
Pavir.J22933 Panicum virgatum Pavir.J22933 N 0.856
SapurV1A.0092s0130 Salix purpurea SapurV1A.0092s0130 N 0.856
SapurV1A.0613s0120 Salix purpurea SapurV1A.0613s0120 N 0.856
SapurV1A.1055s0160 Salix purpurea SapurV1A.1055s0160 N 0.856
SapurV1A.1124s0170 Salix purpurea SapurV1A.1124s0170 N 0.856
Thhalv10009836m.g Eutrema salsugineum Thhalv10009836m.g N 0.856
Thhalv10018867m.g Eutrema salsugineum Thhalv10018867m.g N 0.856
PK14736.1 Cannabis sativa PK14736.1 N 0.856
PK21294.1 Cannabis sativa PK21294.1 N 0.856
chr1.LjT16B05.110.nd Lotus japonicus chr1.LjT16B05.110.nd N 0.856
chr1.LjT40H13.220.nd Lotus japonicus chr1.LjT40H13.220.nd N 0.856
chr5.CM0211.190.nc Lotus japonicus chr5.CM0211.190.nc N 0.856
chr6.CM0738.340.nd Lotus japonicus chr6.CM0738.340.nd N 0.856
BGIOSGA026779 Oryza indica BGIOSGA026779 N 0.855
OB08G25610 Oryza brachyantha OB08G25610 N 0.855
OBART08G18480 Oryza barthii OBART08G18480 N 0.855
OGLUM08G19420 Oryza glumaepatula OGLUM08G19420 N 0.855
OMERI08G14480 Oryza meridionalis OMERI08G14480 N 0.855
ONIVA08G20580 Oryza nivara ONIVA08G20580 N 0.855
OPUNC08G16410 Oryza punctata OPUNC08G16410 N 0.855
ORGLA08G0160400 Oryza glaberrima ORGLA08G0160400 N 0.855
ORUFI08G20670 Oryza rufipogon ORUFI08G20670 N 0.855
OS08G0483900 Oryza sativa OS08G0483900 N 0.855
chr1.CM0544.580.nd Lotus japonicus chr1.CM0544.580.nd N 0.855
FAMA Arabidopsis thaliana AT3G24140 N 0.853
Bo1g101110 Brassica oleracea Bo1g101110 N 0.853
Bo3g082010 Brassica oleracea Bo3g082010 N 0.853
Bo7g037540 Brassica oleracea Bo7g037540 N 0.853
Bra001929 Brassica rapa Bra001929 N 0.853
Bra028357 Brassica rapa Bra028357 N 0.853
GLYMA01G23230 Glycine max GLYMA01G23230 N 0.853
GLYMA02G14290 Glycine max GLYMA02G14290 N 0.853
GLYMA06G35330 Glycine max GLYMA06G35330 N 0.853
GLYMA08G36590 Glycine max GLYMA08G36590 N 0.853
GRMZM2G015666 Zea mays GRMZM2G015666 N 0.853
MTR_0194s0050 Medicago truncatula MTR_0194s0050 N 0.853
MTR_8g066770 Medicago truncatula MTR_8g066770 N 0.853
PGSC0003DMG400015760 Solanum tuberosum PGSC0003DMG400015760 N 0.853
PGSC0003DMG400017540 Solanum tuberosum PGSC0003DMG400017540 N 0.853
PGSC0003DMG400029634 Solanum tuberosum PGSC0003DMG400029634 N 0.853
POPTR_0001s32160 Populus trichocarpa POPTR_0001s32160 N 0.853
POPTR_0017s08160 Populus trichocarpa POPTR_0017s08160 N 0.853
PRUPE_ppa017746mg Prunus persica PRUPE_ppa017746mg N 0.853
PRUPE_ppa020429mg Prunus persica PRUPE_ppa020429mg N 0.853
FMA Arabidopsis lyrata scaffold_302925.1 N 0.853
SELMODRAFT_428659 Selaginella moellendorffii SELMODRAFT_428659 N 0.853
SELMODRAFT_430716 Selaginella moellendorffii SELMODRAFT_430716 N 0.853
Solyc05g053660.1 Solanum lycopersicum Solyc05g053660.1 N 0.853
Solyc08g076820.2 Solanum lycopersicum Solyc08g076820.2 N 0.853
Solyc09g091760.1 Solanum lycopersicum Solyc09g091760.1 N 0.853
TCM_015694 Theobroma cacao TCM_015694 N 0.853
TCM_020336 Theobroma cacao TCM_020336 N 0.853
FMA Vitis vinifera VIT_05s0029g00050 N 0.853
Ca_12363 Cicer arietinum Ca_12363 N 0.853
Ca_16010 Cicer arietinum Ca_16010 N 0.853
Cla021744 Citrullus lanatus Cla021744 N 0.853
Pm009474 Prunus mume Pm009474 N 0.853
Pm023207 Prunus mume Pm023207 N 0.853
29904.m002956 Ricinus communis 29904.m002956 N 0.853
30054.m000819 Ricinus communis 30054.m000819 N 0.853
cassava27750.m1 Manihot esculenta cassava27750.m1 N 0.853
cassava27856.m1 Manihot esculenta cassava27856.m1 N 0.853
Cucsa.256420 Cucumis sativus Cucsa.256420 N 0.853
mgf015694m Mimulus guttatus mgf015694m N 0.853
Aquca_034_00130 Aquilegia coerulea Aquca_034_00130 N 0.853
Bostr.19424s0222 Boechera stricta Bostr.19424s0222 N 0.853
Cagra.0026s0026 Capsella grandiflora Cagra.0026s0026 N 0.853
Carubv10013821m.g Capsella rubella Carubv10013821m.g N 0.853
Ciclev10005031m.g Citrus clementina Ciclev10005031m.g N 0.853
Eucgr.E00273 Eucalyptus grandis Eucgr.E00273 N 0.853
evm.TU.supercontig_36.191 Carica papaya evm.TU.supercontig_36.191 N 0.853
evm.TU.supercontig_59.132 Carica papaya evm.TU.supercontig_59.132 N 0.853
gene02199-v1.0-hybrid Fragaria vesca gene02199-v1.0-hybrid N 0.853
Gorai.006G217200 Gossypium raimondii Gorai.006G217200 N 0.853
Gorai.008G225800 Gossypium raimondii Gorai.008G225800 N 0.853
Gorai.011G159100 Gossypium raimondii Gorai.011G159100 N 0.853
Lus10016680.g Linum usitatissimum Lus10016680.g N 0.853
MDP0000646823 Malus domestica MDP0000646823 N 0.853
orange1.1g014477m.g Citrus sinensis orange1.1g014477m.g N 0.853
SapurV1A.0462s0070 Salix purpurea SapurV1A.0462s0070 N 0.853
Thhalv10002558m.g Eutrema salsugineum Thhalv10002558m.g N 0.853
PK04856.1 Cannabis sativa PK04856.1 N 0.853
PK28391.1 Cannabis sativa PK28391.1 N 0.853
GSMUA_Achr3G06660_001 Musa acuminata GSMUA_Achr3G06660_001 N 0.851
Gorai.009G233000 Gossypium raimondii Gorai.009G233000 N 0.849
GLYMA10G29760 Glycine max GLYMA10G29760 N 0.845
AMTR_s00008p00198780 Amborella trichopoda AMTR_s00008p00198780 N 0.844
Ca_28086 Cicer arietinum Ca_28086 N 0.844
Cla016479 Citrullus lanatus Cla016479 N 0.842
Cucsa.313010 Cucumis sativus Cucsa.313010 N 0.842
Lus10007139.g Linum usitatissimum Lus10007139.g N 0.842
e_gw1.519.9.1 Physcomitrella patens e_gw1.519.9.1 N 0.840
estExt_gwp_gw1.C_710125 Physcomitrella patens estExt_gwp_gw1.C_710125 N 0.840
Thhalv10002990m.g Eutrema salsugineum Thhalv10002990m.g N 0.840