Lus10005668.g (Linum usitatissimum)
Sigma 70

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF04542 (Sigma70_r2) IPR007627 Lus10005668.g T324202_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10005668 Sigma 70 284 354

Links

Other Sigma 70 family TFs
Other Linum usitatissimum TFs

42 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30148.m001412 Ricinus communis 30148.m001412 N 0.859
AMTR_s00011p00258380 Amborella trichopoda AMTR_s00011p00258380 N 0.831
Aquca_013_00876 Aquilegia coerulea Aquca_013_00876 N 0.831
SIGB Arabidopsis thaliana AT1G08540 N 0.831
Bo5g009070 Brassica oleracea Bo5g009070 N 0.803
Bostr.25219s0090 Boechera stricta Bostr.25219s0090 N 0.831
Bra018617 Brassica rapa Bra018617 N 0.803
Bra030732 Brassica rapa Bra030732 N 0.831
Cagra.4395s0044 Capsella grandiflora Cagra.4395s0044 N 0.831
Carubv10008711m.g Capsella rubella Carubv10008711m.g N 0.831
cassava14033.valid.m1 Manihot esculenta cassava14033.valid.m1 N 0.845
Ca_04693 Cicer arietinum Ca_04693 N 0.817
chr1.CM0017.250.nc Lotus japonicus chr1.CM0017.250.nc N 0.859
Ciclev10030998m.g Citrus clementina Ciclev10030998m.g N 0.845
Cla007091 Citrullus lanatus Cla007091 N 0.859
Cucsa.362600 Cucumis sativus Cucsa.362600 N 0.859
Eucgr.D01094 Eucalyptus grandis Eucgr.D01094 N 0.845
evm.TU.supercontig_73.29 Carica papaya evm.TU.supercontig_73.29 N 0.859
SIGB Arabidopsis lyrata fgenesh2_kg.1__869__AT1G08540.1 N 0.831
gene17946-v1.0-hybrid Fragaria vesca gene17946-v1.0-hybrid N 0.859
GLYMA04G00330 Glycine max GLYMA04G00330 N 0.803
Gorai.004G253700 Gossypium raimondii Gorai.004G253700 N 0.803
Gorai.007G347300 Gossypium raimondii Gorai.007G347300 N 0.845
GSMUA_Achr7G04860_001 Musa acuminata GSMUA_Achr7G04860_001 N 0.831
GSMUA_Achr7G17330_001 Musa acuminata GSMUA_Achr7G17330_001 N 0.845
Lus10020325.g Linum usitatissimum Lus10020325.g N 1.000
MDP0000157652 Malus domestica MDP0000157652 N 0.831
mgf015824m Mimulus guttatus mgf015824m N 0.845
MTR_3g118290 Medicago truncatula MTR_3g118290 N 0.803
orange1.1g007404m.g Citrus sinensis orange1.1g007404m.g N 0.845
PGSC0003DMG400031111 Solanum tuberosum PGSC0003DMG400031111 N 0.803
PK16345.1 Cannabis sativa PK16345.1 N 0.859
Pm025497 Prunus mume Pm025497 N 0.845
POPTR_0013s06770 Populus trichocarpa POPTR_0013s06770 N 0.845
POPTR_0019s06100 Populus trichocarpa POPTR_0019s06100 N 0.817
PRUPE_ppa006657mg Prunus persica PRUPE_ppa006657mg N 0.845
SapurV1A.1189s0050 Salix purpurea SapurV1A.1189s0050 N 0.831
SapurV1A.1953s0020 Salix purpurea SapurV1A.1953s0020 N 0.845
Solyc01g081490.2 Solanum lycopersicum Solyc01g081490.2 N 0.817
TCM_025741 Theobroma cacao TCM_025741 N 0.859
Thhalv10007187m.g Eutrema salsugineum Thhalv10007187m.g N 0.831
SIGB Vitis vinifera VIT_15s0024g00640 N 0.845