Cagra.4395s0044 (Capsella grandiflora)
Sigma 70

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF04542 (Sigma70_r2) IPR007627 Cagra.4395s0044 T324159_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.4395s0044.1.p Sigma 70 335 405

Links

Other Sigma 70 family TFs
Other Capsella grandiflora TFs

49 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SIGB Arabidopsis thaliana AT1G08540 N 1.000
Bra030732 Brassica rapa Bra030732 N 1.000
SIGB Arabidopsis lyrata fgenesh2_kg.1__869__AT1G08540.1 N 1.000
Bostr.25219s0090 Boechera stricta Bostr.25219s0090 N 1.000
Carubv10008711m.g Capsella rubella Carubv10008711m.g N 1.000
Thhalv10007187m.g Eutrema salsugineum Thhalv10007187m.g N 1.000
mgf015824m Mimulus guttatus mgf015824m N 0.986
Bo5g009070 Brassica oleracea Bo5g009070 N 0.972
Bra018617 Brassica rapa Bra018617 N 0.972
PGSC0003DMG400031111 Solanum tuberosum PGSC0003DMG400031111 N 0.972
TCM_025741 Theobroma cacao TCM_025741 N 0.972
Cla007091 Citrullus lanatus Cla007091 N 0.972
30148.m001412 Ricinus communis 30148.m001412 N 0.972
evm.TU.supercontig_73.29 Carica papaya evm.TU.supercontig_73.29 N 0.972
gene17946-v1.0-hybrid Fragaria vesca gene17946-v1.0-hybrid N 0.972
PK16345.1 Cannabis sativa PK16345.1 N 0.972
chr1.CM0017.250.nc Lotus japonicus chr1.CM0017.250.nc N 0.972
PRUPE_ppa006657mg Prunus persica PRUPE_ppa006657mg N 0.958
Solyc01g081490.2 Solanum lycopersicum Solyc01g081490.2 N 0.958
SIGB Vitis vinifera VIT_15s0024g00640 N 0.958
Pm025497 Prunus mume Pm025497 N 0.958
cassava14033.valid.m1 Manihot esculenta cassava14033.valid.m1 N 0.958
Cucsa.362600 Cucumis sativus Cucsa.362600 N 0.958
Ciclev10030998m.g Citrus clementina Ciclev10030998m.g N 0.958
Eucgr.D01094 Eucalyptus grandis Eucgr.D01094 N 0.958
Gorai.007G347300 Gossypium raimondii Gorai.007G347300 N 0.958
orange1.1g007404m.g Citrus sinensis orange1.1g007404m.g N 0.958
SapurV1A.1953s0020 Salix purpurea SapurV1A.1953s0020 N 0.958
GLYMA04G00330 Glycine max GLYMA04G00330 N 0.944
Aquca_013_00876 Aquilegia coerulea Aquca_013_00876 N 0.944
MDP0000157652 Malus domestica MDP0000157652 N 0.944
SapurV1A.1189s0050 Salix purpurea SapurV1A.1189s0050 N 0.944
POPTR_0013s06770 Populus trichocarpa POPTR_0013s06770 N 0.930
POPTR_0019s06100 Populus trichocarpa POPTR_0019s06100 N 0.930
AMTR_s00011p00258380 Amborella trichopoda AMTR_s00011p00258380 N 0.915
GSMUA_Achr7G04860_001 Musa acuminata GSMUA_Achr7G04860_001 N 0.901
MTR_3g118290 Medicago truncatula MTR_3g118290 N 0.901
Ca_04693 Cicer arietinum Ca_04693 N 0.887
GSMUA_Achr7G17330_001 Musa acuminata GSMUA_Achr7G17330_001 N 0.873
Gorai.004G253700 Gossypium raimondii Gorai.004G253700 N 0.873
Lus10005668.g Linum usitatissimum Lus10005668.g N 0.831
Lus10020325.g Linum usitatissimum Lus10020325.g N 0.831
estExt_Genewise1.C_340313 Physcomitrella patens estExt_Genewise1.C_340313 N 0.775
SapurV1A.0671s0070 Salix purpurea SapurV1A.0671s0070 N 0.718
OPUNC11G10590 Oryza punctata OPUNC11G10590 N 0.704
estExt_fgenesh1_pg.C_280046 Physcomitrella patens estExt_fgenesh1_pg.C_280046 N 0.704
Lus10001339.g Linum usitatissimum Lus10001339.g N 0.704
Lus10013642.g Linum usitatissimum Lus10013642.g N 0.704
Pavir.Ia03759 Panicum virgatum Pavir.Ia03759 N 0.700