CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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OPUNC11G10590
(
Oryza punctata
)
Sigma 70
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF04542 (Sigma70_r2)
IPR007627
OPUNC11G10590
T323920_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
OPUNC11G10590.1
Sigma 70
329
399
MVTSNVRLVISIAREFEGPGMELYDLIQEGMQGLIRGAEKFDATKGFRFSTYSHWWIKQAMRKSVSEQSQI
Links
Other
Sigma 70
family TFs
Other
Oryza punctata
TFs
54 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
OGLUM11G12180
Oryza glumaepatula
OGLUM11G12180
N
0.986
OB11G19800
Oryza brachyantha
OB11G19800
N
0.986
OLONG_012202
Oryza longistaminata
OLONG_012202
N
0.986
ORGLA11G0105900
Oryza glaberrima
ORGLA11G0105900
N
0.986
OS11G0448400
Oryza sativa
OS11G0448400
N
0.986
LPERR11G10050
Leersia perrieri
LPERR11G10050
N
0.986
ORUFI11G13080
Oryza rufipogon
ORUFI11G13080
N
0.986
BGIOSGA015860
Oryza indica
BGIOSGA015860
N
0.986
Si026193m.g
Setaria italica
Si026193m.g
N
0.972
Pavir.J05262
Panicum virgatum
Pavir.J05262
N
0.972
Sb0010s016080
Sorghum bicolor
Sb0010s016080
N
0.972
Pavir.Hb00670
Panicum virgatum
Pavir.Hb00670
N
0.958
Traes_4DL_65B3128BF
Triticum aestivum
Traes_4DL_65B3128BF
N
0.957
Traes_4BL_9CB9E3F96
Triticum aestivum
Traes_4BL_9CB9E3F96
N
0.957
Traes_4AS_26117D669
Triticum aestivum
Traes_4AS_26117D669
N
0.957
Traes_4AL_26117D669
Triticum aestivum
Traes_4AL_26117D669
N
0.957
BRADI4G19540
Brachypodium distachyon
BRADI4G19540
N
0.957
TRIUR3_30646
Triticum urartu
TRIUR3_30646
N
0.957
F775_14570
Aegilops tauschii
F775_14570
N
0.957
GRMZM2G143392
Zea mays
GRMZM2G143392
N
0.944
Pavir.Ia03759
Panicum virgatum
Pavir.Ia03759
N
0.900
Pavir.J38369
Panicum virgatum
Pavir.J38369
N
0.873
OS03G0271100
Oryza sativa
OS03G0271100
N
0.859
BGIOSGA012312
Oryza indica
BGIOSGA012312
N
0.859
Sb01g039810
Sorghum bicolor
Sb01g039810
N
0.859
OB03G22220
Oryza brachyantha
OB03G22220
N
0.859
OLONG_007716
Oryza longistaminata
OLONG_007716
N
0.859
BRADI1G66830
Brachypodium distachyon
BRADI1G66830
N
0.859
OBART03G12110
Oryza barthii
OBART03G12110
N
0.859
ONIVA03G13860
Oryza nivara
ONIVA03G13860
N
0.859
ORGLA03G0116800
Oryza glaberrima
ORGLA03G0116800
N
0.859
OPUNC03G11670
Oryza punctata
OPUNC03G11670
N
0.859
Si035112m.g
Setaria italica
Si035112m.g
N
0.857
GRMZM2G003182
Zea mays
GRMZM2G003182
N
0.857
GRMZM2G100086
Zea mays
GRMZM2G100086
N
0.857
GRMZM2G164084
Zea mays
GRMZM2G164084
N
0.857
MLOC_59299
Hordeum vulgare
MLOC_59299
N
0.845
Traes_4DL_B8D22E4C2
Triticum aestivum
Traes_4DL_B8D22E4C2
N
0.845
F775_32094
Aegilops tauschii
F775_32094
N
0.845
Traes_4AS_DE644E0CF
Triticum aestivum
Traes_4AS_DE644E0CF
N
0.845
PGSC0003DMG400031111
Solanum tuberosum
PGSC0003DMG400031111
N
0.718
Solyc01g081490.2
Solanum lycopersicum
Solyc01g081490.2
N
0.718
orange1.1g007404m.g
Citrus sinensis
orange1.1g007404m.g
N
0.704
GSMUA_Achr7G04860_001
Musa acuminata
GSMUA_Achr7G04860_001
N
0.704
SIGB
Arabidopsis lyrata
fgenesh2_kg.1__869__AT1G08540.1
N
0.704
Gorai.007G347300
Gossypium raimondii
Gorai.007G347300
N
0.704
Thhalv10007187m.g
Eutrema salsugineum
Thhalv10007187m.g
N
0.704
Bostr.25219s0090
Boechera stricta
Bostr.25219s0090
N
0.704
Bra030732
Brassica rapa
Bra030732
N
0.704
SIGB
Arabidopsis thaliana
AT1G08540
N
0.704
mgf015824m
Mimulus guttatus
mgf015824m
N
0.704
Cagra.4395s0044
Capsella grandiflora
Cagra.4395s0044
N
0.704
Carubv10008711m.g
Capsella rubella
Carubv10008711m.g
N
0.704
Ciclev10030998m.g
Citrus clementina
Ciclev10030998m.g
N
0.704