Pavir.J38369 (Panicum virgatum)
Sigma 70

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF04542 (Sigma70_r2) IPR007627 Pavir.J38369 T324237_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J38369.1.p Sigma 70 293 362

Links

Other Sigma 70 family TFs
Other Panicum virgatum TFs

40 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GRMZM2G164084 Zea mays GRMZM2G164084 N 0.971
GRMZM2G100086 Zea mays GRMZM2G100086 N 0.971
Pavir.Ia03759 Panicum virgatum Pavir.Ia03759 N 0.971
GRMZM2G003182 Zea mays GRMZM2G003182 N 0.971
Sb01g039810 Sorghum bicolor Sb01g039810 N 0.957
Si035112m.g Setaria italica Si035112m.g N 0.943
OLONG_007716 Oryza longistaminata OLONG_007716 N 0.929
ONIVA03G13860 Oryza nivara ONIVA03G13860 N 0.929
ORGLA03G0116800 Oryza glaberrima ORGLA03G0116800 N 0.929
OS03G0271100 Oryza sativa OS03G0271100 N 0.929
OBART03G12110 Oryza barthii OBART03G12110 N 0.929
BGIOSGA012312 Oryza indica BGIOSGA012312 N 0.929
OPUNC03G11670 Oryza punctata OPUNC03G11670 N 0.929
BRADI1G66830 Brachypodium distachyon BRADI1G66830 N 0.929
OB03G22220 Oryza brachyantha OB03G22220 N 0.929
Traes_4AS_DE644E0CF Triticum aestivum Traes_4AS_DE644E0CF N 0.914
MLOC_59299 Hordeum vulgare MLOC_59299 N 0.914
F775_32094 Aegilops tauschii F775_32094 N 0.914
Traes_4DL_B8D22E4C2 Triticum aestivum Traes_4DL_B8D22E4C2 N 0.914
Traes_4AL_26117D669 Triticum aestivum Traes_4AL_26117D669 N 0.900
Traes_4BL_9CB9E3F96 Triticum aestivum Traes_4BL_9CB9E3F96 N 0.900
Traes_4DL_65B3128BF Triticum aestivum Traes_4DL_65B3128BF N 0.900
BRADI4G19540 Brachypodium distachyon BRADI4G19540 N 0.900
Traes_4AS_26117D669 Triticum aestivum Traes_4AS_26117D669 N 0.900
F775_14570 Aegilops tauschii F775_14570 N 0.900
TRIUR3_30646 Triticum urartu TRIUR3_30646 N 0.900
LPERR11G10050 Leersia perrieri LPERR11G10050 N 0.887
OLONG_012202 Oryza longistaminata OLONG_012202 N 0.887
BGIOSGA015860 Oryza indica BGIOSGA015860 N 0.887
OGLUM11G12180 Oryza glumaepatula OGLUM11G12180 N 0.887
ORGLA11G0105900 Oryza glaberrima ORGLA11G0105900 N 0.887
OB11G19800 Oryza brachyantha OB11G19800 N 0.887
Pavir.Hb00670 Panicum virgatum Pavir.Hb00670 N 0.887
ORUFI11G13080 Oryza rufipogon ORUFI11G13080 N 0.887
OS11G0448400 Oryza sativa OS11G0448400 N 0.887
Pavir.J05262 Panicum virgatum Pavir.J05262 N 0.873
Sb0010s016080 Sorghum bicolor Sb0010s016080 N 0.873
Si026193m.g Setaria italica Si026193m.g N 0.873
OPUNC11G10590 Oryza punctata OPUNC11G10590 N 0.873
GRMZM2G143392 Zea mays GRMZM2G143392 N 0.845