estExt_Genewise1.C_340313 (Physcomitrella patens)
Sigma 70

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF04542 (Sigma70_r2) IPR007627 estExt_Genewise1.C_340313 T324117_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
estExt_Genewise1.C_340313 Sigma 70 340 410

Links

Other Sigma 70 family TFs
Other Physcomitrella patens TFs

56 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
estExt_fgenesh1_pg.C_280046 Physcomitrella patens estExt_fgenesh1_pg.C_280046 N 0.915
e_gw1.7.4.1 Physcomitrella patens e_gw1.7.4.1 N 0.845
estExt_gwp_gw1.C_280061 Physcomitrella patens estExt_gwp_gw1.C_280061 N 0.845
POPTR_0019s06100 Populus trichocarpa POPTR_0019s06100 N 0.789
Solyc01g081490.2 Solanum lycopersicum Solyc01g081490.2 N 0.789
mgf015824m Mimulus guttatus mgf015824m N 0.789
SapurV1A.1953s0020 Salix purpurea SapurV1A.1953s0020 N 0.789
SIGB Arabidopsis thaliana AT1G08540 N 0.775
Bra030732 Brassica rapa Bra030732 N 0.775
SIGB Arabidopsis lyrata fgenesh2_kg.1__869__AT1G08540.1 N 0.775
GLYMA04G00330 Glycine max GLYMA04G00330 N 0.775
PGSC0003DMG400031111 Solanum tuberosum PGSC0003DMG400031111 N 0.775
TCM_025741 Theobroma cacao TCM_025741 N 0.775
Cla007091 Citrullus lanatus Cla007091 N 0.775
30148.m001412 Ricinus communis 30148.m001412 N 0.775
Bostr.25219s0090 Boechera stricta Bostr.25219s0090 N 0.775
Cagra.4395s0044 Capsella grandiflora Cagra.4395s0044 N 0.775
Carubv10008711m.g Capsella rubella Carubv10008711m.g N 0.775
Ciclev10030998m.g Citrus clementina Ciclev10030998m.g N 0.775
evm.TU.supercontig_73.29 Carica papaya evm.TU.supercontig_73.29 N 0.775
gene17946-v1.0-hybrid Fragaria vesca gene17946-v1.0-hybrid N 0.775
orange1.1g007404m.g Citrus sinensis orange1.1g007404m.g N 0.775
SapurV1A.1189s0050 Salix purpurea SapurV1A.1189s0050 N 0.775
Thhalv10007187m.g Eutrema salsugineum Thhalv10007187m.g N 0.775
ABW97889.1 Hemiselmis andersenii ABW97889.1 N 0.775
AFP65672.1 Chroomonas mesostigmatica AFP65672.1 N 0.775
PK16345.1 Cannabis sativa PK16345.1 N 0.775
chr1.CM0017.250.nc Lotus japonicus chr1.CM0017.250.nc N 0.775
Bo5g009070 Brassica oleracea Bo5g009070 N 0.761
Bra018617 Brassica rapa Bra018617 N 0.761
POPTR_0013s06770 Populus trichocarpa POPTR_0013s06770 N 0.761
PRUPE_ppa006657mg Prunus persica PRUPE_ppa006657mg N 0.761
SIGB Vitis vinifera VIT_15s0024g00640 N 0.761
Pm025497 Prunus mume Pm025497 N 0.761
cassava14033.valid.m1 Manihot esculenta cassava14033.valid.m1 N 0.761
Cucsa.362600 Cucumis sativus Cucsa.362600 N 0.761
Eucgr.D01094 Eucalyptus grandis Eucgr.D01094 N 0.761
Gorai.007G347300 Gossypium raimondii Gorai.007G347300 N 0.761
MDP0000157652 Malus domestica MDP0000157652 N 0.761
AMTR_s00011p00258380 Amborella trichopoda AMTR_s00011p00258380 N 0.746
OSTLU_41331 Ostreococcus lucimarinus OSTLU_41331 N 0.746
e_gw1.6.1215.1 Ostreococcus RCC809 e_gw1.6.1215.1 N 0.746
estExt_fgenesh1_pg.C_60156 Micromonas pusilla estExt_fgenesh1_pg.C_60156 N 0.746
estExt_fgenesh2_kg.C_60284 Fragilariopsis cylindrus estExt_fgenesh2_kg.C_60284 N 0.746
Aquca_013_00876 Aquilegia coerulea Aquca_013_00876 N 0.746
fgenesh2_pg.C_Chr_04000345 Micromonas sp RCC299 fgenesh2_pg.C_Chr_04000345 N 0.746
e_gw1.06.00.250.1 Ostreococcus tauri e_gw1.06.00.250.1 N 0.746
GSMUA_Achr7G17330_001 Musa acuminata GSMUA_Achr7G17330_001 N 0.732
MTR_3g118290 Medicago truncatula MTR_3g118290 N 0.732
53467 Aureococcus anophagefferens 53467 N 0.732
GSMUA_Achr7G04860_001 Musa acuminata GSMUA_Achr7G04860_001 N 0.718
Phatr3_J9312 Phaeodactylum tricornutum Phatr3_J9312 N 0.718
Thaps33891 Thalassiosira pseudonana Thaps33891 N 0.718
Ca_04693 Cicer arietinum Ca_04693 N 0.718
TTRE_0000710801 Trichuris trichiura TTRE_0000710801 N 0.718
CMK044C Cyanidioschyzon merolae CMK044C N 0.704