Lus10013642.g (Linum usitatissimum)
Sigma 70

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF04542 (Sigma70_r2) IPR007627 Lus10013642.g T324204_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10013642 Sigma 70 304 374

Links

Other Sigma 70 family TFs
Other Linum usitatissimum TFs

30 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Lus10001339.g Linum usitatissimum Lus10001339.g N 0.972
GSMUA_Achr7G04860_001 Musa acuminata GSMUA_Achr7G04860_001 N 0.746
cassava14033.valid.m1 Manihot esculenta cassava14033.valid.m1 N 0.732
Gorai.007G347300 Gossypium raimondii Gorai.007G347300 N 0.732
TCM_025741 Theobroma cacao TCM_025741 N 0.718
Cla007091 Citrullus lanatus Cla007091 N 0.718
30148.m001412 Ricinus communis 30148.m001412 N 0.718
Ciclev10030998m.g Citrus clementina Ciclev10030998m.g N 0.718
evm.TU.supercontig_73.29 Carica papaya evm.TU.supercontig_73.29 N 0.718
gene17946-v1.0-hybrid Fragaria vesca gene17946-v1.0-hybrid N 0.718
Gorai.004G253700 Gossypium raimondii Gorai.004G253700 N 0.718
orange1.1g007404m.g Citrus sinensis orange1.1g007404m.g N 0.718
PK16345.1 Cannabis sativa PK16345.1 N 0.718
chr1.CM0017.250.nc Lotus japonicus chr1.CM0017.250.nc N 0.718
SIGB Arabidopsis thaliana AT1G08540 N 0.704
Bra030732 Brassica rapa Bra030732 N 0.704
SIGB Arabidopsis lyrata fgenesh2_kg.1__869__AT1G08540.1 N 0.704
GSMUA_Achr7G17330_001 Musa acuminata GSMUA_Achr7G17330_001 N 0.704
POPTR_0019s06100 Populus trichocarpa POPTR_0019s06100 N 0.704
PRUPE_ppa006657mg Prunus persica PRUPE_ppa006657mg N 0.704
SIGB Vitis vinifera VIT_15s0024g00640 N 0.704
Pm025497 Prunus mume Pm025497 N 0.704
Cucsa.362600 Cucumis sativus Cucsa.362600 N 0.704
mgf015824m Mimulus guttatus mgf015824m N 0.704
Bostr.25219s0090 Boechera stricta Bostr.25219s0090 N 0.704
Cagra.4395s0044 Capsella grandiflora Cagra.4395s0044 N 0.704
Carubv10008711m.g Capsella rubella Carubv10008711m.g N 0.704
Eucgr.D01094 Eucalyptus grandis Eucgr.D01094 N 0.704
SapurV1A.1953s0020 Salix purpurea SapurV1A.1953s0020 N 0.704
Thhalv10007187m.g Eutrema salsugineum Thhalv10007187m.g N 0.704