orange1.1g009449m.g (Citrus sinensis)
Sigma 70

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF04542 (Sigma70_r2) IPR007627 orange1.1g009449m.g T324223_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
orange1.1g009449m Sigma 70 300 370
orange1.1g012638m Sigma 70 300 370
orange1.1g013472m Sigma 70 300 370
orange1.1g016759m Sigma 70 300 370
orange1.1g016880m Sigma 70 300 370
orange1.1g016894m Sigma 70 300 370
orange1.1g017616m Sigma 70 300 368

Links

Other Sigma 70 family TFs
Other Citrus sinensis TFs

35 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACOC_0000735101 Angiostrongylus costaricensis ACOC_0000735101 N
ANCCEY_08318 Ancylostoma ceylanicum ANCCEY_08318 N
ASU_12421 Ascaris suum ASU_12421 N
Bm4516 Brugia malayi Bm4516 N
BTMF_0000196601 Brugia timori BTMF_0000196601 N
DICVIV_10160 Dictyocaulus viviparus DICVIV_10160 N
EEL_0000168701 Elaeophora elaphi EEL_0000168701 N
GPLIN_001183200 Globodera pallida GPLIN_001183200 N
HCOI01581600 Haemonchus contortus HCOI01581600 N
LOAG_10644 Loa loa LOAG_10644 N
nAv.1.0.1.g00516 Acanthocheilonema viteae nAv.1.0.1.g00516 N
nDi.2.2.2.g01644 Dirofilaria immitis nDi.2.2.2.g01644 N
NECAME_02209 Necator americanus NECAME_02209 N
nLs.2.1.2.g03512 Litomosoides sigmodontis nLs.2.1.2.g03512 N
WUBG_03758 Wuchereria bancrofti WUBG_03758 N