orange1.1g009449m.g (Citrus sinensis)
Sigma 70

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF04542 (Sigma70_r2) IPR007627 orange1.1g009449m.g T324223_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
orange1.1g009449m Sigma 70 300 370
orange1.1g012638m Sigma 70 300 370
orange1.1g013472m Sigma 70 300 370
orange1.1g016759m Sigma 70 300 370
orange1.1g016880m Sigma 70 300 370
orange1.1g016894m Sigma 70 300 370
orange1.1g017616m Sigma 70 300 368

Links

Other Sigma 70 family TFs
Other Citrus sinensis TFs

35 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Ciclev10007968m.g Citrus clementina Ciclev10007968m.g N 1.000
SIGC Arabidopsis lyrata Al_scaffold_0005_2291 N 0.859
SIGC Arabidopsis thaliana AT3G53920 N 0.859
Bostr.11793s0002 Boechera stricta Bostr.11793s0002 N 0.859
Thhalv10010251m.g Eutrema salsugineum Thhalv10010251m.g N 0.859
Bo4g120510 Brassica oleracea Bo4g120510 N 0.845
Cagra.2252s0020 Capsella grandiflora Cagra.2252s0020 N 0.845
Carubv10016920m.g Capsella rubella Carubv10016920m.g N 0.845
Bra014857 Brassica rapa Bra014857 N 0.831
PGSC0003DMG400025465 Solanum tuberosum PGSC0003DMG400025465 N 0.831
Solyc08g065970.2 Solanum lycopersicum Solyc08g065970.2 N 0.831
cassava18263.valid.m1 Manihot esculenta cassava18263.valid.m1 N 0.831
Pm005207 Prunus mume Pm005207 N 0.814
GLYMA17G26620 Glycine max GLYMA17G26620 N 0.803
29794.m003368 Ricinus communis 29794.m003368 N 0.803
Gorai.010G103500 Gossypium raimondii Gorai.010G103500 N 0.803
Eucgr.C00620 Eucalyptus grandis Eucgr.C00620 N 0.789
AMTR_s00056p00209700 Amborella trichopoda AMTR_s00056p00209700 N 0.775
PRUPE_ppa003696mg Prunus persica PRUPE_ppa003696mg N 0.775
TCM_037242 Theobroma cacao TCM_037242 N 0.775
SapurV1A.0890s0100 Salix purpurea SapurV1A.0890s0100 N 0.775
SIGC Vitis vinifera VIT_04s0008g00600 N 0.761
Ca_14896 Cicer arietinum Ca_14896 N 0.761
Pm005208 Prunus mume Pm005208 N 0.761
mgf012819m Mimulus guttatus mgf012819m N 0.761
gene09028-v1.0-hybrid Fragaria vesca gene09028-v1.0-hybrid N 0.761
PK05603.1 Cannabis sativa PK05603.1 N 0.761
GLYMA14G22170 Glycine max GLYMA14G22170 N 0.746
GSMUA_Achr4G01060_001 Musa acuminata GSMUA_Achr4G01060_001 N 0.746
PDK_20s1533271g001 Phoenix dactylifera PDK_20s1533271g001 N 0.746
MTR_1g007370 Medicago truncatula MTR_1g007370 N 0.732
MDP0000135483 Malus domestica MDP0000135483 N 0.732
MDP0000315125 Malus domestica MDP0000315125 N 0.732
Aquca_001_00199 Aquilegia coerulea Aquca_001_00199 N 0.718