Thhalv10010251m.g (Eutrema salsugineum)
Sigma 70

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF04542 (Sigma70_r2) IPR007627 Thhalv10010251m.g T324255_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10010251m Sigma 70 327 397

Links

Other Sigma 70 family TFs
Other Eutrema salsugineum TFs

33 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SIGC Arabidopsis lyrata Al_scaffold_0005_2291 N 0.972
Bostr.11793s0002 Boechera stricta Bostr.11793s0002 N 0.972
Cagra.2252s0020 Capsella grandiflora Cagra.2252s0020 N 0.958
Carubv10016920m.g Capsella rubella Carubv10016920m.g N 0.958
SIGC Arabidopsis thaliana AT3G53920 N 0.944
Bo4g120510 Brassica oleracea Bo4g120510 N 0.944
Bra014857 Brassica rapa Bra014857 N 0.915
Eucgr.C00620 Eucalyptus grandis Eucgr.C00620 N 0.873
Ciclev10007968m.g Citrus clementina Ciclev10007968m.g N 0.859
orange1.1g009449m.g Citrus sinensis orange1.1g009449m.g N 0.859
PGSC0003DMG400025465 Solanum tuberosum PGSC0003DMG400025465 N 0.845
Solyc08g065970.2 Solanum lycopersicum Solyc08g065970.2 N 0.845
TCM_037242 Theobroma cacao TCM_037242 N 0.831
29794.m003368 Ricinus communis 29794.m003368 N 0.817
Gorai.010G103500 Gossypium raimondii Gorai.010G103500 N 0.817
Pm005207 Prunus mume Pm005207 N 0.814
cassava18263.valid.m1 Manihot esculenta cassava18263.valid.m1 N 0.803
mgf012819m Mimulus guttatus mgf012819m N 0.803
Pm005208 Prunus mume Pm005208 N 0.789
PRUPE_ppa003696mg Prunus persica PRUPE_ppa003696mg N 0.775
SIGC Vitis vinifera VIT_04s0008g00600 N 0.775
SapurV1A.0890s0100 Salix purpurea SapurV1A.0890s0100 N 0.775
GLYMA17G26620 Glycine max GLYMA17G26620 N 0.761
Ca_14896 Cicer arietinum Ca_14896 N 0.761
Aquca_001_00199 Aquilegia coerulea Aquca_001_00199 N 0.761
gene09028-v1.0-hybrid Fragaria vesca gene09028-v1.0-hybrid N 0.761
PK05603.1 Cannabis sativa PK05603.1 N 0.746
AMTR_s00056p00209700 Amborella trichopoda AMTR_s00056p00209700 N 0.732
MTR_1g007370 Medicago truncatula MTR_1g007370 N 0.732
MDP0000135483 Malus domestica MDP0000135483 N 0.718
MDP0000315125 Malus domestica MDP0000315125 N 0.718
PDK_20s1533271g001 Phoenix dactylifera PDK_20s1533271g001 N 0.718
GLYMA14G22170 Glycine max GLYMA14G22170 N 0.704