PGSC0003DMG400025465 (Solanum tuberosum)
Sigma 70

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF04542 (Sigma70_r2) IPR007627 PGSC0003DMG400025465 T323941_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400065481 Sigma 70 310 380
PGSC0003DMT400065483 Sigma 70 322 392

Links

Other Sigma 70 family TFs
Other Solanum tuberosum TFs

34 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Solyc08g065970.2 Solanum lycopersicum Solyc08g065970.2 N 1.000
SIGC Arabidopsis lyrata Al_scaffold_0005_2291 N 0.845
Pm005208 Prunus mume Pm005208 N 0.845
Bostr.11793s0002 Boechera stricta Bostr.11793s0002 N 0.845
Thhalv10010251m.g Eutrema salsugineum Thhalv10010251m.g N 0.845
Pm005207 Prunus mume Pm005207 N 0.837
SIGC Arabidopsis thaliana AT3G53920 N 0.831
PRUPE_ppa003696mg Prunus persica PRUPE_ppa003696mg N 0.831
mgf012819m Mimulus guttatus mgf012819m N 0.831
Cagra.2252s0020 Capsella grandiflora Cagra.2252s0020 N 0.831
Carubv10016920m.g Capsella rubella Carubv10016920m.g N 0.831
Ciclev10007968m.g Citrus clementina Ciclev10007968m.g N 0.831
orange1.1g009449m.g Citrus sinensis orange1.1g009449m.g N 0.831
Bo4g120510 Brassica oleracea Bo4g120510 N 0.817
TCM_037242 Theobroma cacao TCM_037242 N 0.817
SIGC Vitis vinifera VIT_04s0008g00600 N 0.817
Eucgr.C00620 Eucalyptus grandis Eucgr.C00620 N 0.817
gene09028-v1.0-hybrid Fragaria vesca gene09028-v1.0-hybrid N 0.817
Bra014857 Brassica rapa Bra014857 N 0.803
29794.m003368 Ricinus communis 29794.m003368 N 0.789
Gorai.010G103500 Gossypium raimondii Gorai.010G103500 N 0.789
AMTR_s00056p00209700 Amborella trichopoda AMTR_s00056p00209700 N 0.775
cassava18263.valid.m1 Manihot esculenta cassava18263.valid.m1 N 0.775
SapurV1A.0890s0100 Salix purpurea SapurV1A.0890s0100 N 0.761
GLYMA17G26620 Glycine max GLYMA17G26620 N 0.746
Aquca_001_00199 Aquilegia coerulea Aquca_001_00199 N 0.746
MDP0000135483 Malus domestica MDP0000135483 N 0.746
MDP0000315125 Malus domestica MDP0000315125 N 0.746
PK05603.1 Cannabis sativa PK05603.1 N 0.746
Ca_14896 Cicer arietinum Ca_14896 N 0.732
MTR_1g007370 Medicago truncatula MTR_1g007370 N 0.718
PDK_20s1533271g001 Phoenix dactylifera PDK_20s1533271g001 N 0.718
GLYMA14G22170 Glycine max GLYMA14G22170 N 0.704