Aquca_001_00199 (Aquilegia coerulea)
Sigma 70

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF04542 (Sigma70_r2) IPR007627 Aquca_001_00199 T324142_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Aquca_001_00199.11 Sigma 70 227 297
Aquca_001_00199.1 Sigma 70 322 392
Aquca_001_00199.2 Sigma 70 310 380
Aquca_001_00199.3 Sigma 70 310 380
Aquca_001_00199.4 Sigma 70 264 334
Aquca_001_00199.6 Sigma 70 227 297
Aquca_001_00199.7 Sigma 70 227 297
Aquca_001_00199.8 Sigma 70 310 380
Aquca_001_00199.9 Sigma 70 310 380

Links

Other Sigma 70 family TFs
Other Aquilegia coerulea TFs

26 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SIGC Arabidopsis lyrata Al_scaffold_0005_2291 N 0.775
Bostr.11793s0002 Boechera stricta Bostr.11793s0002 N 0.775
Cagra.2252s0020 Capsella grandiflora Cagra.2252s0020 N 0.775
Carubv10016920m.g Capsella rubella Carubv10016920m.g N 0.775
SIGC Arabidopsis thaliana AT3G53920 N 0.761
Thhalv10010251m.g Eutrema salsugineum Thhalv10010251m.g N 0.761
Bo4g120510 Brassica oleracea Bo4g120510 N 0.746
PGSC0003DMG400025465 Solanum tuberosum PGSC0003DMG400025465 N 0.746
PRUPE_ppa003696mg Prunus persica PRUPE_ppa003696mg N 0.746
Solyc08g065970.2 Solanum lycopersicum Solyc08g065970.2 N 0.746
Pm005208 Prunus mume Pm005208 N 0.746
cassava18263.valid.m1 Manihot esculenta cassava18263.valid.m1 N 0.746
mgf012819m Mimulus guttatus mgf012819m N 0.746
PK05603.1 Cannabis sativa PK05603.1 N 0.746
AMTR_s00056p00209700 Amborella trichopoda AMTR_s00056p00209700 N 0.732
Bra014857 Brassica rapa Bra014857 N 0.732
TCM_037242 Theobroma cacao TCM_037242 N 0.732
SIGC Vitis vinifera VIT_04s0008g00600 N 0.732
Eucgr.C00620 Eucalyptus grandis Eucgr.C00620 N 0.732
gene09028-v1.0-hybrid Fragaria vesca gene09028-v1.0-hybrid N 0.732
Ciclev10007968m.g Citrus clementina Ciclev10007968m.g N 0.718
orange1.1g009449m.g Citrus sinensis orange1.1g009449m.g N 0.718
GLYMA17G26620 Glycine max GLYMA17G26620 N 0.704
29794.m003368 Ricinus communis 29794.m003368 N 0.704
Gorai.010G103500 Gossypium raimondii Gorai.010G103500 N 0.704