gene09028-v1.0-hybrid (Fragaria vesca)
Sigma 70

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF04542 (Sigma70_r2) IPR007627 gene09028-v1.0-hybrid T324186_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
mrna09028.1-v1.0-hybrid Sigma 70 324 394

Links

Other Sigma 70 family TFs
Other Fragaria vesca TFs

33 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Pm005207 Prunus mume Pm005207 N 0.977
PRUPE_ppa003696mg Prunus persica PRUPE_ppa003696mg N 0.958
Pm005208 Prunus mume Pm005208 N 0.958
MDP0000135483 Malus domestica MDP0000135483 N 0.901
MDP0000315125 Malus domestica MDP0000315125 N 0.901
PK05603.1 Cannabis sativa PK05603.1 N 0.859
PGSC0003DMG400025465 Solanum tuberosum PGSC0003DMG400025465 N 0.817
SIGC Vitis vinifera VIT_04s0008g00600 N 0.817
Solyc08g065970.2 Solanum lycopersicum Solyc08g065970.2 N 0.817
mgf012819m Mimulus guttatus mgf012819m N 0.803
TCM_037242 Theobroma cacao TCM_037242 N 0.803
cassava18263.valid.m1 Manihot esculenta cassava18263.valid.m1 N 0.789
Eucgr.C00620 Eucalyptus grandis Eucgr.C00620 N 0.789
29794.m003368 Ricinus communis 29794.m003368 N 0.789
Ca_14896 Cicer arietinum Ca_14896 N 0.789
GLYMA17G26620 Glycine max GLYMA17G26620 N 0.789
SIGC Arabidopsis thaliana AT3G53920 N 0.775
SapurV1A.0890s0100 Salix purpurea SapurV1A.0890s0100 N 0.775
MTR_1g007370 Medicago truncatula MTR_1g007370 N 0.775
Bo4g120510 Brassica oleracea Bo4g120510 N 0.761
orange1.1g009449m.g Citrus sinensis orange1.1g009449m.g N 0.761
Thhalv10010251m.g Eutrema salsugineum Thhalv10010251m.g N 0.761
Ciclev10007968m.g Citrus clementina Ciclev10007968m.g N 0.761
Carubv10016920m.g Capsella rubella Carubv10016920m.g N 0.761
SIGC Arabidopsis lyrata Al_scaffold_0005_2291 N 0.761
Cagra.2252s0020 Capsella grandiflora Cagra.2252s0020 N 0.761
Bostr.11793s0002 Boechera stricta Bostr.11793s0002 N 0.761
AMTR_s00056p00209700 Amborella trichopoda AMTR_s00056p00209700 N 0.746
Bra014857 Brassica rapa Bra014857 N 0.746
GLYMA14G22170 Glycine max GLYMA14G22170 N 0.746
Gorai.010G103500 Gossypium raimondii Gorai.010G103500 N 0.746
PDK_20s1533271g001 Phoenix dactylifera PDK_20s1533271g001 N 0.732
Aquca_001_00199 Aquilegia coerulea Aquca_001_00199 N 0.732