Eucgr.C00620 (Eucalyptus grandis)
Sigma 70

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF04542 (Sigma70_r2) IPR007627 Eucgr.C00620 T324177_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Eucgr.C00620.1 Sigma 70 322 392
Eucgr.C00620.2 Sigma 70 322 392
Eucgr.C00620.3 Sigma 70 322 392

Links

Other Sigma 70 family TFs
Other Eucalyptus grandis TFs

32 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Thhalv10010251m.g Eutrema salsugineum Thhalv10010251m.g N 0.873
SIGC Arabidopsis lyrata Al_scaffold_0005_2291 N 0.859
Bostr.11793s0002 Boechera stricta Bostr.11793s0002 N 0.859
SIGC Arabidopsis thaliana AT3G53920 N 0.845
TCM_037242 Theobroma cacao TCM_037242 N 0.845
Cagra.2252s0020 Capsella grandiflora Cagra.2252s0020 N 0.845
Carubv10016920m.g Capsella rubella Carubv10016920m.g N 0.845
Bo4g120510 Brassica oleracea Bo4g120510 N 0.831
Bra014857 Brassica rapa Bra014857 N 0.817
PGSC0003DMG400025465 Solanum tuberosum PGSC0003DMG400025465 N 0.817
Solyc08g065970.2 Solanum lycopersicum Solyc08g065970.2 N 0.817
Pm005208 Prunus mume Pm005208 N 0.817
PRUPE_ppa003696mg Prunus persica PRUPE_ppa003696mg N 0.803
Gorai.010G103500 Gossypium raimondii Gorai.010G103500 N 0.803
mgf012819m Mimulus guttatus mgf012819m N 0.789
Ciclev10007968m.g Citrus clementina Ciclev10007968m.g N 0.789
gene09028-v1.0-hybrid Fragaria vesca gene09028-v1.0-hybrid N 0.789
orange1.1g009449m.g Citrus sinensis orange1.1g009449m.g N 0.789
SIGC Vitis vinifera VIT_04s0008g00600 N 0.775
Ca_14896 Cicer arietinum Ca_14896 N 0.775
29794.m003368 Ricinus communis 29794.m003368 N 0.775
cassava18263.valid.m1 Manihot esculenta cassava18263.valid.m1 N 0.775
MTR_1g007370 Medicago truncatula MTR_1g007370 N 0.761
PK05603.1 Cannabis sativa PK05603.1 N 0.761
AMTR_s00056p00209700 Amborella trichopoda AMTR_s00056p00209700 N 0.746
SapurV1A.0890s0100 Salix purpurea SapurV1A.0890s0100 N 0.746
GLYMA17G26620 Glycine max GLYMA17G26620 N 0.732
Aquca_001_00199 Aquilegia coerulea Aquca_001_00199 N 0.732
MDP0000135483 Malus domestica MDP0000135483 N 0.732
MDP0000315125 Malus domestica MDP0000315125 N 0.732
PDK_20s1533271g001 Phoenix dactylifera PDK_20s1533271g001 N 0.704