CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
MDP0000315125
(
Malus domestica
)
Sigma 70
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF04542 (Sigma70_r2)
IPR007627
MDP0000315125
T324217_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
MDP0000315125
Sigma 70
335
405
LIRSTRSLVLYLARSYRGLGVAMDDLLQAGNLGLLQGAERYDPSRGYRFSTYVRYWIKKSMSRLVARHARG
Links
Other
Sigma 70
family TFs
Other
Malus domestica
TFs
30 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
MDP0000135483
Malus domestica
MDP0000135483
N
1.000
gene09028-v1.0-hybrid
Fragaria vesca
gene09028-v1.0-hybrid
N
0.901
PRUPE_ppa003696mg
Prunus persica
PRUPE_ppa003696mg
N
0.887
Pm005208
Prunus mume
Pm005208
N
0.873
PK05603.1
Cannabis sativa
PK05603.1
N
0.831
SIGC
Vitis vinifera
VIT_04s0008g00600
N
0.775
GLYMA17G26620
Glycine max
GLYMA17G26620
N
0.761
TCM_037242
Theobroma cacao
TCM_037242
N
0.761
Ca_14896
Cicer arietinum
Ca_14896
N
0.761
SapurV1A.0890s0100
Salix purpurea
SapurV1A.0890s0100
N
0.761
PGSC0003DMG400025465
Solanum tuberosum
PGSC0003DMG400025465
N
0.746
Solyc08g065970.2
Solanum lycopersicum
Solyc08g065970.2
N
0.746
29794.m003368
Ricinus communis
29794.m003368
N
0.746
cassava18263.valid.m1
Manihot esculenta
cassava18263.valid.m1
N
0.746
mgf012819m
Mimulus guttatus
mgf012819m
N
0.746
AMTR_s00056p00209700
Amborella trichopoda
AMTR_s00056p00209700
N
0.732
MTR_1g007370
Medicago truncatula
MTR_1g007370
N
0.732
Ciclev10007968m.g
Citrus clementina
Ciclev10007968m.g
N
0.732
Eucgr.C00620
Eucalyptus grandis
Eucgr.C00620
N
0.732
Gorai.010G103500
Gossypium raimondii
Gorai.010G103500
N
0.732
orange1.1g009449m.g
Citrus sinensis
orange1.1g009449m.g
N
0.732
SIGC
Arabidopsis lyrata
Al_scaffold_0005_2291
N
0.718
SIGC
Arabidopsis thaliana
AT3G53920
N
0.718
GLYMA14G22170
Glycine max
GLYMA14G22170
N
0.718
Bostr.11793s0002
Boechera stricta
Bostr.11793s0002
N
0.718
Cagra.2252s0020
Capsella grandiflora
Cagra.2252s0020
N
0.718
Carubv10016920m.g
Capsella rubella
Carubv10016920m.g
N
0.718
Thhalv10010251m.g
Eutrema salsugineum
Thhalv10010251m.g
N
0.718
PDK_20s1533271g001
Phoenix dactylifera
PDK_20s1533271g001
N
0.718
Bo4g120510
Brassica oleracea
Bo4g120510
N
0.704