29794.m003368 (Ricinus communis)
Sigma 70

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF04542 (Sigma70_r2) IPR007627 29794.m003368 T324070_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
29794.m003368 Sigma 70 326 396

Links

Other Sigma 70 family TFs
Other Ricinus communis TFs

33 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
cassava18263.valid.m1 Manihot esculenta cassava18263.valid.m1 N 0.887
SapurV1A.0890s0100 Salix purpurea SapurV1A.0890s0100 N 0.859
TCM_037242 Theobroma cacao TCM_037242 N 0.831
Ca_14896 Cicer arietinum Ca_14896 N 0.831
SIGC Arabidopsis lyrata Al_scaffold_0005_2291 N 0.817
SIGC Arabidopsis thaliana AT3G53920 N 0.817
Bostr.11793s0002 Boechera stricta Bostr.11793s0002 N 0.817
Thhalv10010251m.g Eutrema salsugineum Thhalv10010251m.g N 0.817
Pm005207 Prunus mume Pm005207 N 0.814
Bo4g120510 Brassica oleracea Bo4g120510 N 0.803
MTR_1g007370 Medicago truncatula MTR_1g007370 N 0.803
PRUPE_ppa003696mg Prunus persica PRUPE_ppa003696mg N 0.803
SIGC Vitis vinifera VIT_04s0008g00600 N 0.803
Cagra.2252s0020 Capsella grandiflora Cagra.2252s0020 N 0.803
Carubv10016920m.g Capsella rubella Carubv10016920m.g N 0.803
Ciclev10007968m.g Citrus clementina Ciclev10007968m.g N 0.803
orange1.1g009449m.g Citrus sinensis orange1.1g009449m.g N 0.803
Bra014857 Brassica rapa Bra014857 N 0.789
PGSC0003DMG400025465 Solanum tuberosum PGSC0003DMG400025465 N 0.789
Solyc08g065970.2 Solanum lycopersicum Solyc08g065970.2 N 0.789
Pm005208 Prunus mume Pm005208 N 0.789
gene09028-v1.0-hybrid Fragaria vesca gene09028-v1.0-hybrid N 0.789
GLYMA17G26620 Glycine max GLYMA17G26620 N 0.775
Eucgr.C00620 Eucalyptus grandis Eucgr.C00620 N 0.775
Gorai.010G103500 Gossypium raimondii Gorai.010G103500 N 0.775
PK05603.1 Cannabis sativa PK05603.1 N 0.775
AMTR_s00056p00209700 Amborella trichopoda AMTR_s00056p00209700 N 0.746
MDP0000135483 Malus domestica MDP0000135483 N 0.746
MDP0000315125 Malus domestica MDP0000315125 N 0.746
PDK_20s1533271g001 Phoenix dactylifera PDK_20s1533271g001 N 0.746
GLYMA14G22170 Glycine max GLYMA14G22170 N 0.718
mgf012819m Mimulus guttatus mgf012819m N 0.718
Aquca_001_00199 Aquilegia coerulea Aquca_001_00199 N 0.704