Ogr07749 (Ophisaurus gracilis)
SMAD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03165 (MH1) IPR003619 Ogr07749 T325334_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Smad3
M00192_2.00 		Mus musculus
NNNNNMGMCN
NGKCKNNNNN		 PBM
Badis et al.(2009)
Smad3_3805 		0.923 0.923
SMAD3
M03482_2.00 		Homo sapiens
YGTCTAGACA
TGTCTAGACR		 SELEX
Jolma et al.(2013)
SMAD3_1 		0.923 0.923
SMAD3
M09380_2.00 		Homo sapiens
NBCTSHCWSCWB
VWGSWGDSAGVN		 Misc
Kulakovskiy et al.(2013)
SMAD3_HUMAN.H11MO.0.B 		0.923 0.923
Smad3
M09384_2.00 		Mus musculus
NBCTSHCWSCWB
VWGSWGDSAGVN		 Misc
Kulakovskiy et al.(2013)
SMAD3_MOUSE.H11MO.0.B 		0.923 0.923
Smad3
M09637_2.00 		Mus musculus
BYAGMCWN
NWGKCTRV		 Misc
Heinz et al.(2010)
NPC-Smad3_GSE36673 		0.923 0.923
SMAD3
M11283_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SMAD3_Q6_01 		0.923 0.923
SMAD3
M11284_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SMAD3_Q6_02 		0.923 0.923
SMAD3
M11285_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SMAD3_Q6 		0.923 0.923
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ogr07749 SMAD 1 26

Links

Other SMAD family TFs
Other Ophisaurus gracilis TFs

21 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00017p00086440 Amborella trichopoda AMTR_s00017p00086440 I 0.000
Aquca_017_00778 Aquilegia coerulea Aquca_017_00778 I 0.000
STOP1 Arabidopsis thaliana AT1G34370 D 0.000
BGIOSGA004888 Oryza indica BGIOSGA004888 I 0.000
Bo8g027000 Brassica oleracea Bo8g027000 I 0.000
Bostr.1040s0032 Boechera stricta Bostr.1040s0032 I 0.000
Bra040971 Brassica rapa Bra040971 I 0.000
BRADI2G56320 Brachypodium distachyon BRADI2G56320 I 0.000
Cagra.12398s0002 Capsella grandiflora Cagra.12398s0002 I 0.000
Carubv10008876m.g Capsella rubella Carubv10008876m.g I 0.000
cassava22193.valid.m1 Manihot esculenta cassava22193.valid.m1 I 0.000
cassava24483.valid.m1 Manihot esculenta cassava24483.valid.m1 I 0.000
Ca_04300 Cicer arietinum Ca_04300 I 0.000
Ciclev10000850m.g Citrus clementina Ciclev10000850m.g I 0.000
Cla016623 Citrullus lanatus Cla016623 I 0.000
Cucsa.079940 Cucumis sativus Cucsa.079940 I 0.000
Eucgr.F02627 Eucalyptus grandis Eucgr.F02627 I 0.000
F775_04088 Aegilops tauschii F775_04088 I 0.000
STOP1 Arabidopsis lyrata fgenesh2_kg.1__3547__AT1G34370.2 I 0.000
gene27486-v1.0-hybrid Fragaria vesca gene27486-v1.0-hybrid I 0.000
GLYMA10G35940 Glycine max GLYMA10G35940 I 0.000
GLYMA16G27280 Glycine max GLYMA16G27280 I 0.000
GLYMA20G31650 Glycine max GLYMA20G31650 I 0.000
Gorai.006G131700 Gossypium raimondii Gorai.006G131700 I 0.000
GRMZM2G075956 Zea mays GRMZM2G075956 I 0.000
GRMZM2G129428 Zea mays GRMZM2G129428 I 0.000
GSMUA_Achr10G15970_001 Musa acuminata GSMUA_Achr10G15970_001 I 0.000
GSMUA_Achr5G01170_001 Musa acuminata GSMUA_Achr5G01170_001 I 0.000
LPERR01G33350 Leersia perrieri LPERR01G33350 I 0.000
Lus10009435.g Linum usitatissimum Lus10009435.g I 0.000
MDP0000141403 Malus domestica MDP0000141403 I 0.000
MDP0000199559 Malus domestica MDP0000199559 I 0.000
MDP0000453148 Malus domestica MDP0000453148 I 0.000
MDP0000551046 Malus domestica MDP0000551046 I 0.000
MDP0000807856 Malus domestica MDP0000807856 I 0.000
mgf000060m Mimulus guttatus mgf000060m I 0.000
MLOC_10987 Hordeum vulgare MLOC_10987 I 0.000
OB01G47470 Oryza brachyantha OB01G47470 I 0.000
OBART01G38810 Oryza barthii OBART01G38810 I 0.000
OLONG_020555 Oryza longistaminata OLONG_020555 I 0.000
ONIVA01G43630 Oryza nivara ONIVA01G43630 I 0.000
OPUNC01G37530 Oryza punctata OPUNC01G37530 I 0.000
orange1.1g009831m.g Citrus sinensis orange1.1g009831m.g I 0.000
ORGLA01G0326400 Oryza glaberrima ORGLA01G0326400 I 0.000
ORUFI01G42150 Oryza rufipogon ORUFI01G42150 I 0.000
OS01G0871200 Oryza sativa OS01G0871200 I 0.000
Pavir.J06328 Panicum virgatum Pavir.J06328 I 0.000
Pavir.J12018 Panicum virgatum Pavir.J12018 I 0.000
Pavir.J14096 Panicum virgatum Pavir.J14096 I 0.000
PGSC0003DMG400009234 Solanum tuberosum PGSC0003DMG400009234 I 0.000
PK23301.1 Cannabis sativa PK23301.1 I 0.000
Pm022201 Prunus mume Pm022201 I 0.000
POPTR_0019s11520 Populus trichocarpa POPTR_0019s11520 I 0.000
PRUPE_ppa004510mg Prunus persica PRUPE_ppa004510mg I 0.000
SapurV1A.0287s0150 Salix purpurea SapurV1A.0287s0150 I 0.000
SapurV1A.2334s0030 Salix purpurea SapurV1A.2334s0030 I 0.000
Sb03g041170 Sorghum bicolor Sb03g041170 I 0.000
Si001053m.g Setaria italica Si001053m.g I 0.000
Solyc11g017140.1 Solanum lycopersicum Solyc11g017140.1 I 0.000
TCM_036719 Theobroma cacao TCM_036719 I 0.000
Thhalv10007411m.g Eutrema salsugineum Thhalv10007411m.g I 0.000
TRAES3BF044200110CFD_g Triticum aestivum TRAES3BF044200110CFD_g I 0.000
Traes_3DL_0284E68CC1 Triticum aestivum Traes_3DL_0284E68CC1 I 0.000
TRIUR3_13796 Triticum urartu TRIUR3_13796 I 0.000
STOP1 Vitis vinifera VIT_18s0072g00840 I 0.000