GSMUA_AchrUn_randomG05290_001 (Musa acuminata)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 GSMUA_AchrUn_randomG05290_001 T330382_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMG-1
M02720_2.00 		Pisum sativum
STYGTDHTY
RADHACRAS		 SELEX
Mathelier et al.(2014)
MA0044.1 		0.451 0.536
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GSMUA_AchrUn_randomP05290_001 Sox 106 175

Links

Other Sox family TFs
Other Musa acuminata TFs

195 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
evm.TU.supercontig_331.6 Carica papaya evm.TU.supercontig_331.6 I
evm.TU.supercontig_96.47 Carica papaya evm.TU.supercontig_96.47 N
GLYMA19G44645 Glycine max GLYMA19G44645 N
Gorai.004G151300 Gossypium raimondii Gorai.004G151300 N
Gorai.007G110000 Gossypium raimondii Gorai.007G110000 N
MDP0000223109 Malus domestica MDP0000223109 N
PK11227.1 Cannabis sativa PK11227.1 N
Pm018346 Prunus mume Pm018346 N
POPTR_0014s16510 Populus trichocarpa POPTR_0014s16510 N
PRUPE_ppa025888mg Prunus persica PRUPE_ppa025888mg N
SapurV1A.0054s0370 Salix purpurea SapurV1A.0054s0370 N
TCM_005120 Theobroma cacao TCM_005120 N
VIT_15s0046g00230 Vitis vinifera VIT_15s0046g00230 N
VIT_15s0046g00240 Vitis vinifera VIT_15s0046g00240 N