PGSC0003DMG400001413 (Solanum tuberosum)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 PGSC0003DMG400001413 T331838_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400003573 Sox 283 300
PGSC0003DMT400003573 Sox 295 324

Links

Other Sox family TFs
Other Solanum tuberosum TFs

40 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29801.m003163 Ricinus communis 29801.m003163 N
30170.m013700 Ricinus communis 30170.m013700 N
AMTR_s00017p00226990 Amborella trichopoda AMTR_s00017p00226990 N
BHLH95 Arabidopsis thaliana AT1G49770 N
Bo5g076460 Brassica oleracea Bo5g076460 N
Bo6g018390 Brassica oleracea Bo6g018390 N
Bostr.26675s0191 Boechera stricta Bostr.26675s0191 N
Bra018796 Brassica rapa Bra018796 N
Bra040671 Brassica rapa Bra040671 N
Cagra.2481s0020 Capsella grandiflora Cagra.2481s0020 N
Carubv10011964m.g Capsella rubella Carubv10011964m.g N
cassava46929.m1 Manihot esculenta cassava46929.m1 N
cassava47360.m1 Manihot esculenta cassava47360.m1 N
Eucgr.G01493 Eucalyptus grandis Eucgr.G01493 N
RGE1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1003696 N
gene24577-v1.0-hybrid Fragaria vesca gene24577-v1.0-hybrid N
GLYMA02G11500 Glycine max GLYMA02G11500 N
Gorai.002G135000 Gossypium raimondii Gorai.002G135000 N
Gorai.013G045100 Gossypium raimondii Gorai.013G045100 N
GSMUA_Achr9G08780_001 Musa acuminata GSMUA_Achr9G08780_001 N
MDP0000484847 Malus domestica MDP0000484847 N
MDP0000713910 Malus domestica MDP0000713910 N
Pavir.J18412 Panicum virgatum Pavir.J18412 N
Pm021290 Prunus mume Pm021290 N
RGE1 Populus trichocarpa POPTR_0001s31250 N
PRUPE_ppa018148mg Prunus persica PRUPE_ppa018148mg N
PRUPE_ppa022683mg Prunus persica PRUPE_ppa022683mg N
SapurV1A.0005s1150 Salix purpurea SapurV1A.0005s1150 N
SapurV1A.0423s0120 Salix purpurea SapurV1A.0423s0120 N
SapurV1A.0643s0100 Salix purpurea SapurV1A.0643s0100 N
SELMODRAFT_424152 Selaginella moellendorffii SELMODRAFT_424152 N
SELMODRAFT_446556 Selaginella moellendorffii SELMODRAFT_446556 N
Si009419m.g Setaria italica Si009419m.g N
TCM_007083 Theobroma cacao TCM_007083 N
TCM_033803 Theobroma cacao TCM_033803 N
Thhalv10012185m.g Eutrema salsugineum Thhalv10012185m.g N
RGE1 Vitis vinifera VIT_03s0063g00170 N
VIT_18s0001g10300 Vitis vinifera VIT_18s0001g10300 N