PHACADRAFT_30138 (Phanerochaete carnosa)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 PHACADRAFT_30138 T331894_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ROX1
M00070_2.00 		Saccharomyces cerevisiae
NRAACAATWNN
NNWATTGTTYN		 PBM
Badis et al.(2008)
ROX1_2099 		0.448 0.420
ROX1
M07498_2.00 		Saccharomyces cerevisiae
YYHATTGTTYTS
SARAACAATDRR		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0371.1 		0.448 0.420
ROX1
M08607_2.00 		Saccharomyces cerevisiae
BYATTGTN
NACAATRV		 Misc
DeBoer et al.(2011)
YPR065W_1396 		0.448 0.420
ROX1
M11346_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$ROX1_Q6_01 		0.448 0.420
ROX1
M11347_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$ROX1_Q6 		0.448 0.420
ste11
M11342_2.00 		Schizosaccharomyces pombe
DWNTTTCTTTGTTHNHWW
WWDNDAACAAAGAAANWH		 Transfac
Matys et al.(2006)
F$STE11_01 		0.443 0.275
ste11
M11343_2.00 		Schizosaccharomyces pombe Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$STE11_02 		0.443 0.275
fmf-1
M02491_2.00 		Neurospora crassa
TCTTTGTY
RACAAAGA		 PBM
Weirauch et al.(2014)
pTH8941 		0.416 0.290
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EKM53046 Sox 154 223

Links

Other Sox family TFs
Other Phanerochaete carnosa TFs

402 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACAC_0001218201 Angiostrongylus cantonensis ACAC_0001218201 N 0.000
ACOC_0000329601 Angiostrongylus costaricensis ACOC_0000329601 N 0.000
ALUE_0001180601 Ascaris lumbricoides ALUE_0001180601 N 0.000
ANCCAN_15383 Ancylostoma caninum ANCCAN_15383 N 0.000
ANCCEY_04433 Ancylostoma ceylanicum ANCCEY_04433 N 0.000
ASIM_0001160201 Anisakis simplex ASIM_0001160201 N 0.000
Bm4813 Brugia malayi Bm4813 N 0.000
CGOC_0000927301 Cylicostephanus goldi CGOC_0000927301 N 0.000
D917_05194 Trichinella nativa D917_05194 N 0.000
D918_01735 Trichuris suis D918_01735 N 0.000
DME_0000413601 Dracunculus medinensis DME_0000413601 N 0.000
EEL_0000340601 Elaeophora elaphi EEL_0000340601 N 0.000
EVEC_0001249101 Enterobius vermicularis EVEC_0001249101 N 0.000
GPUH_0002215801 Gongylonema pulchrum GPUH_0002215801 N 0.000
Hba_00636 Heterorhabditis bacteriophora Hba_00636 N 0.000
HCOI00202100 Haemonchus contortus HCOI00202100 N 0.000
HPLM_0000008901 Haemonchus placei HPLM_0000008901 N 0.000
HPLM_0001566201 Haemonchus placei HPLM_0001566201 N 0.000
L596_g21980 Steinernema carpocapsae L596_g21980 N 0.000
L889_g15502 Steinernema feltiae L889_g15502 N 0.000
L892_g11079 Steinernema scapterisci L892_g11079 N 0.000
L893_g2345 Steinernema glaseri L893_g2345 N 0.000
L898_g30040 Steinernema monticolum L898_g30040 N 0.000
LOAG_06215 Loa loa LOAG_06215 N 0.000
Minc04978 Meloidogyne incognita Minc04978 N 0.000
nAv.1.0.1.g02191 Acanthocheilonema viteae nAv.1.0.1.g02191 N 0.000
NBR_0002098301 Nippostrongylus brasiliensis NBR_0002098301 N 0.000
nDi.2.2.2.g02408 Dirofilaria immitis nDi.2.2.2.g02408 N 0.000
NECAME_03414 Necator americanus NECAME_03414 N 0.000
nLs.2.1.2.g00583 Litomosoides sigmodontis nLs.2.1.2.g00583 N 0.000
nOo.2.0.1.g01013 Onchocerca ochengi nOo.2.0.1.g01013 N 0.000
nRc.2.0.1.g25601 Romanomermis culicivorax nRc.2.0.1.g25601 N 0.000
OESDEN_04377 Oesophagostomum dentatum OESDEN_04377 N 0.000
OFLC_0001358201 Onchocerca flexuosa OFLC_0001358201 N 0.000
PPA09670 Pristionchus pacificus PPA09670 N 0.000
PTRK_0000540400 Parastrongyloides trichosuri PTRK_0000540400 N 0.000
RSKR_0000949900 Rhabditophanes kr3021 RSKR_0000949900 N 0.000
scaffold1561-EXSNAP2012.3 Pristionchus exspectatus scaffold1561-EXSNAP2012.3 N 0.000
SMUV_0000007601 Syphacia muris SMUV_0000007601 N 0.000
SPAL_0001197000 Strongyloides papillosus SPAL_0001197000 N 0.000
SSTP_0000398400 Strongyloides stercoralis SSTP_0000398400 N 0.000
SVE_0387200 Strongyloides venezuelensis SVE_0387200 N 0.000
TCLT_0000451401 Thelazia callipaeda TCLT_0000451401 N 0.000
TCNE_0001236501 Toxocara canis TCNE_0001236501 N 0.000
TELCIR_05319 Teladorsagia circumcincta TELCIR_05319 N 0.000
WBGene00237735 Onchocerca volvulus WBGene00237735 N 0.000
WUBG_10166 Wuchereria bancrofti WUBG_10166 N 0.000