scaffold_600397.1 (Arabidopsis lyrata)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 scaffold_600397.1 T332435_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
CRC
M07266_2.00 		Arabidopsis thaliana
TWATCATW
WATGATWA		 Dap-seq
OMalley et al.(2016)
CRC_col_a 		0.426 0.263
CRC
M07267_2.00 		Arabidopsis thaliana
GGTTAGTGTTTTGGAGTCGAATATGACTTG
CAAGTCATATTCGACTCCAAAACACTAACC		 Dap-seq
OMalley et al.(2016)
CRC_colamp_a 		0.426 0.263
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
scaffold_600397.1 Sox 42 82

Links

Other Sox family TFs
Other Arabidopsis lyrata TFs

178 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CSUB01_02310 Colletotrichum sublineola CSUB01_02310 N 0.000
e_gw1.11.509.1 Nectria haematococca e_gw1.11.509.1 N 0.000
NechaG47731 Fusarium solani NechaG47731 N 0.000