scaffold_600397.1 (Arabidopsis lyrata)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 scaffold_600397.1 T332435_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
CRC
M07266_2.00 		Arabidopsis thaliana
TWATCATW
WATGATWA		 Dap-seq
OMalley et al.(2016)
CRC_col_a 		0.426 0.263
CRC
M07267_2.00 		Arabidopsis thaliana
GGTTAGTGTTTTGGAGTCGAATATGACTTG
CAAGTCATATTCGACTCCAAAACACTAACC		 Dap-seq
OMalley et al.(2016)
CRC_colamp_a 		0.426 0.263
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
scaffold_600397.1 Sox 42 82

Links

Other Sox family TFs
Other Arabidopsis lyrata TFs

178 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TCM_018380 Theobroma cacao TCM_018380 I 0.515
BGHDH14_bgh06194 Blumeria graminis BGHDH14_bgh06194 I 0.497
PNEG_03347 Pneumocystis murina PNEG_03347 I 0.497
mgf012563m Mimulus guttatus mgf012563m I 0.496
23225_YPR052C Saccharomyces paradoxus 23225_YPR052C I 0.491
PPA12247 Pristionchus pacificus PPA12247 N 0.469
EuGene.0000010567 Micromonas pusilla EuGene.0000010567 N 0.469
est_cluster_kg.Chr_07__66__3199198:1 Micromonas sp RCC299 est_cluster_kg.Chr_07__66__3199198:1 N 0.469
Ocbimv22010533m.g Octopus bimaculoides Ocbimv22010533m.g N 0.466
PEQ_0000291001 Parascaris equorum PEQ_0000291001 I 0.462
GLYMA01G28820 Glycine max GLYMA01G28820 I 0.460
GLYMA03G08270 Glycine max GLYMA03G08270 I 0.460
Aquca_004_00335 Aquilegia coerulea Aquca_004_00335 I 0.456
BRADI1G29730 Brachypodium distachyon BRADI1G29730 I 0.453
GRMZM5G834758 Zea mays GRMZM5G834758 I 0.453
Si007288m.g Setaria italica Si007288m.g I 0.453
OS02G0258250 Oryza sativa OS02G0258250 N 0.450
EMIHUDRAFT_434306 Emiliania huxleyi EMIHUDRAFT_434306 N 0.446
CpipJ_CPIJ003178 Culex pipiens CpipJ_CPIJ003178 N 0.443
CPIJ003178 Culex quinquefasciatus CPIJ003178 N 0.443
TOX2 Sorex araneus ENSSARG00000001080 N 0.443
AEPI010254 Anopheles epiroticus AEPI010254 N 0.443
ENSCING00000000505 Ciona intestinalis ENSCING00000000505 I 0.442
ISCW008318 Ixodes scapularis ISCW008318 N 0.442
ASIS014204 Anopheles sinensis ASIS014204 N 0.442
BGLB013489 Biomphalaria glabrata BGLB013489 N 0.439
PEQ_0000212901 Parascaris equorum PEQ_0000212901 N 0.438
ENSTGUG00000014902 Taeniopygia guttata ENSTGUG00000014902 N 0.437
L798_00437 Zootermopsis nevadensis L798_00437 N 0.437
PHUM393920 Pediculus humanus PHUM393920 N 0.437
Hsal_06265--XP_624018.2_APIME Harpegnathos saltator Hsal_06265--XP_624018.2_APIME N 0.437
AMAM014030 Anopheles maculatus AMAM014030 N 0.437
AMIN005634 Anopheles minimus AMIN005634 N 0.437
SBAD_0000070901 Soboliphyme baturini SBAD_0000070901 I 0.437
scaffold593-EXSNAP2012.5 Pristionchus exspectatus scaffold593-EXSNAP2012.5 N 0.431
M404DRAFT_63984 Pisolithus tinctorius M404DRAFT_63984 I 0.430
MTR_8g018100 Medicago truncatula MTR_8g018100 N 0.430
POPTR_0002s14600 Populus trichocarpa POPTR_0002s14600 I 0.427
orange1.1g031906m.g Citrus sinensis orange1.1g031906m.g I 0.427
CRC Arabidopsis thaliana AT1G69180 D 0.426
BGIOSGA014650 Oryza indica BGIOSGA014650 I 0.426
Bo6g108630 Brassica oleracea Bo6g108630 I 0.426
Bra004364 Brassica rapa Bra004364 I 0.426
BRADI3G30410 Brachypodium distachyon BRADI3G30410 I 0.426
BRADI3G50050 Brachypodium distachyon BRADI3G50050 I 0.426
BRADI5G16910 Brachypodium distachyon BRADI5G16910 I 0.426
F775_25525 Aegilops tauschii F775_25525 I 0.426
F775_27799 Aegilops tauschii F775_27799 I 0.426
CRC Arabidopsis lyrata fgenesh2_kg.2__1172__AT1G69180.1 I 0.426
GLYMA01G33370 Glycine max GLYMA01G33370 I 0.426
GLYMA03G03500 Glycine max GLYMA03G03500 I 0.426
GLYMA05G04260 Glycine max GLYMA05G04260 I 0.426
GLYMA17G14710 Glycine max GLYMA17G14710 I 0.426
GRMZM2G005353 Zea mays GRMZM2G005353 I 0.426
GRMZM2G054795 Zea mays GRMZM2G054795 I 0.426
GRMZM2G074543 Zea mays GRMZM2G074543 I 0.426
GRMZM2G167824 Zea mays GRMZM2G167824 I 0.426
GRMZM2G529859 Zea mays GRMZM2G529859 I 0.426
GSMUA_Achr11G03800_001 Musa acuminata GSMUA_Achr11G03800_001 I 0.426
GSMUA_Achr11G17520_001 Musa acuminata GSMUA_Achr11G17520_001 I 0.426
GSMUA_Achr7G07130_001 Musa acuminata GSMUA_Achr7G07130_001 I 0.426
GSMUA_Achr8G11580_001 Musa acuminata GSMUA_Achr8G11580_001 I 0.426
LPERR02G20990 Leersia perrieri LPERR02G20990 I 0.426
LPERR04G16190 Leersia perrieri LPERR04G16190 I 0.426
LPERR10G11580 Leersia perrieri LPERR10G11580 I 0.426
MLOC_60897 Hordeum vulgare MLOC_60897 I 0.426
MLOC_70653 Hordeum vulgare MLOC_70653 I 0.426
MTR_4g025900 Medicago truncatula MTR_4g025900 I 0.426
MTR_4g101660 Medicago truncatula MTR_4g101660 I 0.426
OB02G33040 Oryza brachyantha OB02G33040 I 0.426
OB04G27010 Oryza brachyantha OB04G27010 I 0.426
OBART02G25670 Oryza barthii OBART02G25670 I 0.426
OBART04G20010 Oryza barthii OBART04G20010 I 0.426
OBART10G15260 Oryza barthii OBART10G15260 I 0.426
OGLUM02G26190 Oryza glumaepatula OGLUM02G26190 I 0.426
OGLUM04G19890 Oryza glumaepatula OGLUM04G19890 I 0.426
OGLUM10G15140 Oryza glumaepatula OGLUM10G15140 I 0.426
OLONG_018621 Oryza longistaminata OLONG_018621 I 0.426
OMERI02G25190 Oryza meridionalis OMERI02G25190 I 0.426
OMERI04G17000 Oryza meridionalis OMERI04G17000 I 0.426
OMERI10G11950 Oryza meridionalis OMERI10G11950 I 0.426
ONIVA02G28110 Oryza nivara ONIVA02G28110 I 0.426
ONIVA04G18220 Oryza nivara ONIVA04G18220 I 0.426
ONIVA04G21490 Oryza nivara ONIVA04G21490 I 0.426
OPUNC02G23520 Oryza punctata OPUNC02G23520 I 0.426
OPUNC10G13730 Oryza punctata OPUNC10G13730 I 0.426
ORGLA02G0220100 Oryza glaberrima ORGLA02G0220100 I 0.426
ORGLA04G0171000 Oryza glaberrima ORGLA04G0171000 I 0.426
ORUFI02G27080 Oryza rufipogon ORUFI02G27080 I 0.426
ORUFI04G21570 Oryza rufipogon ORUFI04G21570 I 0.426
ORUFI10G16240 Oryza rufipogon ORUFI10G16240 I 0.426
YAB4 Oryza sativa OS02G0643200 I 0.426
YAB5 Oryza sativa OS04G0536300 I 0.426
YAB3 Oryza sativa OS10G0508300 I 0.426
PGSC0003DMG400025969 Solanum tuberosum PGSC0003DMG400025969 I 0.426
POPTR_0001s00240 Populus trichocarpa POPTR_0001s00240 I 0.426
POPTR_0003s11230 Populus trichocarpa POPTR_0003s11230 I 0.426
POPTR_0014s06210 Populus trichocarpa POPTR_0014s06210 I 0.426
PRUPE_ppa010905mg Prunus persica PRUPE_ppa010905mg I 0.426
PRUPE_ppa011209mg Prunus persica PRUPE_ppa011209mg I 0.426
Sb01g017560 Sorghum bicolor Sb01g017560 I 0.426
Sb04g033590 Sorghum bicolor Sb04g033590 I 0.426
Sb06g023770 Sorghum bicolor Sb06g023770 I 0.426
Si010859m.g Setaria italica Si010859m.g I 0.426
Si018146m.g Setaria italica Si018146m.g I 0.426
Si036788m.g Setaria italica Si036788m.g I 0.426
Solyc01g091010.2 Solanum lycopersicum Solyc01g091010.2 I 0.426
TCM_005549 Theobroma cacao TCM_005549 I 0.426
TCM_016030 Theobroma cacao TCM_016030 I 0.426
Traes_1DL_C5AF9D06A Triticum aestivum Traes_1DL_C5AF9D06A I 0.426
Traes_2AL_71DE02042 Triticum aestivum Traes_2AL_71DE02042 I 0.426
Traes_2BL_8BEA9CE1B Triticum aestivum Traes_2BL_8BEA9CE1B I 0.426
Traes_6AL_2983D4EB6 Triticum aestivum Traes_6AL_2983D4EB6 I 0.426
Traes_6BL_3F8DB6043 Triticum aestivum Traes_6BL_3F8DB6043 I 0.426
Traes_6DL_59DB06B9F Triticum aestivum Traes_6DL_59DB06B9F I 0.426
TRIUR3_27479 Triticum urartu TRIUR3_27479 I 0.426
TRIUR3_29073 Triticum urartu TRIUR3_29073 I 0.426
VIT_02s0154g00070 Vitis vinifera VIT_02s0154g00070 I 0.426
VIT_15s0048g00550 Vitis vinifera VIT_15s0048g00550 I 0.426
Ca_25981 Cicer arietinum Ca_25981 I 0.426
Cla011745 Citrullus lanatus Cla011745 I 0.426
Pm017846 Prunus mume Pm017846 I 0.426
Pm023555 Prunus mume Pm023555 I 0.426
28200.m000191 Ricinus communis 28200.m000191 I 0.426
30174.m008839 Ricinus communis 30174.m008839 I 0.426
cassava13963.valid.m1 Manihot esculenta cassava13963.valid.m1 I 0.426
cassava17722.valid.m1 Manihot esculenta cassava17722.valid.m1 I 0.426
cassava30083.valid.m1 Manihot esculenta cassava30083.valid.m1 I 0.426
cassava43469.valid.m1 Manihot esculenta cassava43469.valid.m1 I 0.426
Cucsa.302100 Cucumis sativus Cucsa.302100 I 0.426
Cucsa.320600 Cucumis sativus Cucsa.320600 I 0.426
mgf003166m Mimulus guttatus mgf003166m I 0.426
mgf011463m Mimulus guttatus mgf011463m I 0.426
mgf015806m Mimulus guttatus mgf015806m I 0.426
Bostr.10273s0455 Boechera stricta Bostr.10273s0455 I 0.426
Cagra.0537s0004 Capsella grandiflora Cagra.0537s0004 I 0.426
Carubv10021641m.g Capsella rubella Carubv10021641m.g I 0.426
Ciclev10021834m.g Citrus clementina Ciclev10021834m.g I 0.426
Ciclev10022170m.g Citrus clementina Ciclev10022170m.g I 0.426
Eucgr.E01474 Eucalyptus grandis Eucgr.E01474 I 0.426
evm.TU.supercontig_145.3 Carica papaya evm.TU.supercontig_145.3 I 0.426
evm.TU.supercontig_29.121 Carica papaya evm.TU.supercontig_29.121 I 0.426
gene32251-v1.0-hybrid Fragaria vesca gene32251-v1.0-hybrid I 0.426
Gorai.001G174800 Gossypium raimondii Gorai.001G174800 I 0.426
Gorai.008G236500 Gossypium raimondii Gorai.008G236500 I 0.426
Lus10010361.g Linum usitatissimum Lus10010361.g I 0.426
Lus10036496.g Linum usitatissimum Lus10036496.g I 0.426
MDP0000124879 Malus domestica MDP0000124879 I 0.426
MDP0000171878 Malus domestica MDP0000171878 I 0.426
MDP0000192940 Malus domestica MDP0000192940 I 0.426
MDP0000291729 Malus domestica MDP0000291729 I 0.426
MDP0000298333 Malus domestica MDP0000298333 I 0.426
orange1.1g027215m.g Citrus sinensis orange1.1g027215m.g I 0.426
orange1.1g028144m.g Citrus sinensis orange1.1g028144m.g I 0.426
Pavir.Aa01223 Panicum virgatum Pavir.Aa01223 I 0.426
Pavir.Ab02534 Panicum virgatum Pavir.Ab02534 I 0.426
Pavir.Ga00891 Panicum virgatum Pavir.Ga00891 I 0.426
Pavir.Gb00743 Panicum virgatum Pavir.Gb00743 I 0.426
Pavir.Ib03707 Panicum virgatum Pavir.Ib03707 I 0.426
SapurV1A.0033s0530 Salix purpurea SapurV1A.0033s0530 I 0.426
SapurV1A.0217s0100 Salix purpurea SapurV1A.0217s0100 I 0.426
SapurV1A.0248s0170 Salix purpurea SapurV1A.0248s0170 I 0.426
SapurV1A.0634s0130 Salix purpurea SapurV1A.0634s0130 I 0.426
SapurV1A.1275s0050 Salix purpurea SapurV1A.1275s0050 I 0.426
SapurV1A.2672s0010 Salix purpurea SapurV1A.2672s0010 I 0.426
Thhalv10019126m.g Eutrema salsugineum Thhalv10019126m.g I 0.426
LjSGA_107961.1 Lotus japonicus LjSGA_107961.1 I 0.426
Minc03634 Meloidogyne incognita Minc03634 N 0.425
Minc04648 Meloidogyne incognita Minc04648 N 0.425
D918_03887 Trichuris suis D918_03887 N 0.424
orange1.1g030283m.g Citrus sinensis orange1.1g030283m.g I 0.422
SapurV1A.2780s0020 Salix purpurea SapurV1A.2780s0020 I 0.422
Moror_16065 Moniliophthora roreri Moror_16065 I 0.421
EuGene.0000050349 Micromonas pusilla EuGene.0000050349 I 0.420
CLEC002888 Cimex lectularius CLEC002888 N 0.419
SPU_000793 Strongylocentrotus purpuratus SPU_000793 N 0.418
D915_12649 Fasciola hepatica D915_12649 N 0.418
ENSMMUP00000034886 Macaca fascicularis ENSMMUP00000034886 N 0.417