23225_YPR052C (Saccharomyces paradoxus)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 23225_YPR052C T335147_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NHP6A
M01566_2.00 		Saccharomyces cerevisiae
NHRYWWWN
NWWWRYDN		 PBM
Zhu et al.(2009)
Nhp6a 		0.439 0.946
NHP6A
M08606_2.00 		Saccharomyces cerevisiae
DNDHNNWTATATADWRDNNDN
NHNNHYWHTATATAWNNDHNH		 Misc
DeBoer et al.(2011)
YPR052C_879 		0.439 0.946
NHP6B
M01565_2.00 		Saccharomyces cerevisiae
NNWHWRYDNN
NNHRYWDWNN		 PBM
Zhu et al.(2009)
Nhp6b 		0.433 0.838
NHP6B
M08603_2.00 		Saccharomyces cerevisiae
HNTHHNWWTATAWWWWRNDN
NHNYWWWWTATAWWNDDAND		 Misc
DeBoer et al.(2011)
YBR089C-A_792 		0.433 0.838
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
23225_YPR052C Sox 21 57

Links

Other Sox family TFs
Other Saccharomyces paradoxus TFs

113 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGHDH14_bgh06194 Blumeria graminis BGHDH14_bgh06194 I 0.629
H101_08199 Trichophyton interdigitale H101_08199 N 0.599
PNEG_03347 Pneumocystis murina PNEG_03347 I 0.579
TCM_018380 Theobroma cacao TCM_018380 I 0.519
EuGene.0000010567 Micromonas pusilla EuGene.0000010567 N 0.512
mgf012563m Mimulus guttatus mgf012563m I 0.507
scaffold_600397.1 Arabidopsis lyrata scaffold_600397.1 I 0.491
EuGene.0000050349 Micromonas pusilla EuGene.0000050349 I 0.491
PEQ_0000212901 Parascaris equorum PEQ_0000212901 N 0.491
0600010013 Ostreococcus tauri 0600010013 I 0.489
GPUH_0000691201 Gongylonema pulchrum GPUH_0000691201 N 0.485
GPUH_0001196001 Gongylonema pulchrum GPUH_0001196001 N 0.485
est_cluster_kg.Chr_07__66__3199198:1 Micromonas sp RCC299 est_cluster_kg.Chr_07__66__3199198:1 N 0.483
estExt_fgenesh1_pg.C_770024 Bigelowiella natans estExt_fgenesh1_pg.C_770024 N 0.476
Ciclev10033714m.g Citrus clementina Ciclev10033714m.g I 0.473
EMIHUDRAFT_434306 Emiliania huxleyi EMIHUDRAFT_434306 N 0.471
GLYMA01G03580 Glycine max GLYMA01G03580 I 0.467
Traes_3AL_730255B9F Triticum aestivum Traes_3AL_730255B9F I 0.467
PK25712.1 Cannabis sativa PK25712.1 N 0.465
BRADI1G29730 Brachypodium distachyon BRADI1G29730 I 0.462
GLYMA12G31670 Glycine max GLYMA12G31670 I 0.462
GRMZM5G834758 Zea mays GRMZM5G834758 I 0.462
Si007288m.g Setaria italica Si007288m.g I 0.462
Cla005767 Citrullus lanatus Cla005767 I 0.462
Eucgr.J00587 Eucalyptus grandis Eucgr.J00587 I 0.462
orange1.1g046045m.g Citrus sinensis orange1.1g046045m.g I 0.462
GLYMA01G28820 Glycine max GLYMA01G28820 I 0.461
GLYMA03G08270 Glycine max GLYMA03G08270 I 0.461
orange1.1g030283m.g Citrus sinensis orange1.1g030283m.g I 0.457
PRUPE_ppa023883mg Prunus persica PRUPE_ppa023883mg I 0.451
INO Vitis vinifera VIT_01s0127g00330 I 0.451
Pm006709 Prunus mume Pm006709 I 0.451
BGLB013489 Biomphalaria glabrata BGLB013489 N 0.451
cassava26804.m1 Manihot esculenta cassava26804.m1 I 0.447
Minc03634 Meloidogyne incognita Minc03634 N 0.442
Minc04648 Meloidogyne incognita Minc04648 N 0.442
AMTR_s00004p00165390 Amborella trichopoda AMTR_s00004p00165390 I 0.441
AMTR_s00085p00032940 Amborella trichopoda AMTR_s00085p00032940 I 0.441
PGSC0003DMG400002883 Solanum tuberosum PGSC0003DMG400002883 I 0.441
Solyc12g009580.1 Solanum lycopersicum Solyc12g009580.1 I 0.441
TCM_031868 Theobroma cacao TCM_031868 I 0.441
YAB2 Vitis vinifera VIT_06s0009g00880 I 0.441
Cla016962 Citrullus lanatus Cla016962 I 0.441
Cucsa.132170 Cucumis sativus Cucsa.132170 I 0.441
mgf009982m Mimulus guttatus mgf009982m I 0.441
Gorai.002G054200 Gossypium raimondii Gorai.002G054200 I 0.441
Lus10019407.g Linum usitatissimum Lus10019407.g I 0.441
KLLA0_B12056g Kluyveromyces lactis KLLA0_B12056g I 0.439
KLTH0E14850g Lachancea thermotolerans KLTH0E14850g I 0.439
LALA0_S09e03686g Lachancea lanzarotensis LALA0_S09e03686g I 0.439
SKUD_180604 Saccharomyces kudriavzevii SKUD_180604 I 0.439
SU7_3651 Saccharomyces arboricola SU7_3651 I 0.439
TBLA_0I02240 Tetrapisispora blattae TBLA_0I02240 I 0.439
TDEL_0C04750 Torulaspora delbrueckii TDEL_0C04750 I 0.439
NHP6A Saccharomyces cerevisiae YPR052C D 0.439
ZBAI_00368 Zygosaccharomyces bailii ZBAI_00368 I 0.439
ZBAI_05520 Zygosaccharomyces bailii ZBAI_05520 I 0.439
ZYRO0C15752g Zygosaccharomyces rouxii ZYRO0C15752g I 0.439
22477_YPR052C Saccharomyces mikatae 22477_YPR052C I 0.439
25751_YPR052C Saccharomyces bayanus 25751_YPR052C I 0.439
KLTH0E14850g Kluyveromyces thermotolerans KLTH0E14850g I 0.439
Kwal_12539 Kluyveromyces waltii Kwal_12539 I 0.439
SAKL0B07150g Lachancea kluyveri SAKL0B07150g I 0.439
GLYMA04G10125 Glycine max GLYMA04G10125 I 0.438
SapurV1A.0248s0170 Salix purpurea SapurV1A.0248s0170 I 0.438
ATEG_04695 Aspergillus terreus CADATEAG00010213 I 0.433
G210_1137 Candida maltosa G210_1137 I 0.433
LELG_04337 Lodderomyces elongisporus LELG_04337 I 0.433
MGG_04489 Magnaporthe oryzae MGG_04489 I 0.433
PDE_04795 Penicillium oxalicum PDE_04795 I 0.433
SBOR_5988 Sclerotinia borealis SBOR_5988 I 0.433
SKUD_201106 Saccharomyces kudriavzevii SKUD_201106 I 0.433
SU7_0186 Saccharomyces arboricola SU7_0186 I 0.433
NHP6B Saccharomyces cerevisiae YBR089C-A D 0.433
1377_YBR089C-A Saccharomyces paradoxus 1377_YBR089C-A I 0.433
2032_YBR089C-A Saccharomyces bayanus 2032_YBR089C-A I 0.433
906_YBR089C-A Saccharomyces mikatae 906_YBR089C-A I 0.433
PICST_23779 Scheffersomyces stipitis PICST_23779 I 0.432
gww1.1.1.1342.1 Pichia stipitis gww1.1.1.1342.1 I 0.432
HPBE_0002300401 Heligmosomoides bakeri HPBE_0002300401 N 0.432
TELCIR_25179 Teladorsagia circumcincta TELCIR_25179 N 0.432
e_gw1.88.21.1 Fragilariopsis cylindrus e_gw1.88.21.1 N 0.430
CPUR_07262 Claviceps purpurea CPUR_07262 I 0.427
F503_07006 Ophiostoma piceae uamh F503_07006 I 0.427
MAC_03215 Metarhizium acridum MAC_03215 I 0.427
MAJ_00874 Metarhizium majus MAJ_00874 I 0.427
MAM_02065 Metarhizium album MAM_02065 I 0.427
MANI_001749 Metarhizium anisopliae MANI_001749 I 0.427
MBM_05761 Marssonina brunnea MBM_05761 I 0.427
MBR_03233 Metarhizium brunneum MBR_03233 I 0.427
MGU_02963 Metarhizium guizhouense MGU_02963 I 0.427
SAPIO_CDS3210 Scedosporium apiospermum SAPIO_CDS3210 I 0.427
SMAC_04223 Sordaria macrospora SMAC_04223 I 0.427
UV8b_6830 Ustilaginoidea virens UV8b_6830 I 0.427
X797_004147 Metarhizium robertsii X797_004147 I 0.427
M404DRAFT_63984 Pisolithus tinctorius M404DRAFT_63984 I 0.426
SNAPOd2T00002710001 Oikopleura dioica SNAPOd2T00002710001 I 0.426
NBR_0000051501 Nippostrongylus brasiliensis NBR_0000051501 N 0.425
TELCIR_19210 Teladorsagia circumcincta TELCIR_19210 N 0.425
Lus10030892.g Linum usitatissimum Lus10030892.g I 0.424
orange1.1g031906m.g Citrus sinensis orange1.1g031906m.g I 0.424
ENSORLG00000018700 Oryzias latipes ENSORLG00000018700 N 0.423
SapurV1A.2780s0020 Salix purpurea SapurV1A.2780s0020 I 0.423
RSKR_0000394100 Rhabditophanes kr3021 RSKR_0000394100 N 0.423
CAGL0H08541g Candida glabrata CAGL0H08541g I 0.420
KAFR_0G01620 Kazachstania africana KAFR_0G01620 I 0.420
KNAG_0J02470 Kazachstania naganishii KNAG_0J02470 I 0.420
POPTR_0010s05220 Populus trichocarpa POPTR_0010s05220 I 0.417
Lus10013028.g Linum usitatissimum Lus10013028.g I 0.417
Lus10029135.g Linum usitatissimum Lus10029135.g I 0.417
SapurV1A.0269s0230 Salix purpurea SapurV1A.0269s0230 I 0.417
MTR_8g018100 Medicago truncatula MTR_8g018100 N 0.416
PEQ_0000291001 Parascaris equorum PEQ_0000291001 I 0.415