CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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0600010013
(
Ostreococcus tauri
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00505 (HMG_box)
IPR000910
0600010013
T335130_2.00
Superfamily (2010-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
CRC
M07266_2.00
Arabidopsis thaliana
TWATCATW
WATGATWA
Dap-seq
OMalley et al.(2016)
CRC_col_a
0.417
0.263
CRC
M07267_2.00
Arabidopsis thaliana
GGTTAGTGTTTTGGAGTCGAATATGACTTG
CAAGTCATATTCGACTCCAAAACACTAACC
Dap-seq
OMalley et al.(2016)
CRC_colamp_a
0.417
0.263
For this family, TFs with SR scores >
0.415
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
0600010013
Sox
26
63
PKRPLSAYMFFAKDQRAAILKKNPSFGVTDVAKALVRK
Links
Other
Sox
family TFs
Other
Ostreococcus tauri
TFs
155 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
23225_YPR052C
Saccharomyces paradoxus
23225_YPR052C
I
0.489
CBN04053
Caenorhabditis brenneri
CBN04053
N
0.475
SapurV1A.0248s0170
Salix purpurea
SapurV1A.0248s0170
I
0.473
Traes_3AL_730255B9F
Triticum aestivum
Traes_3AL_730255B9F
I
0.473
ALUE_0001190701
Ascaris lumbricoides
ALUE_0001190701
N
0.464
OSTLU_31946
Ostreococcus lucimarinus
OSTLU_31946
I
0.446
Gorai.008G147700
Gossypium raimondii
Gorai.008G147700
I
0.445
GLYMA12G31670
Glycine max
GLYMA12G31670
I
0.444
Eucgr.J00587
Eucalyptus grandis
Eucgr.J00587
I
0.444
Cla005767
Citrullus lanatus
Cla005767
I
0.444
orange1.1g046045m.g
Citrus sinensis
orange1.1g046045m.g
I
0.444
BGLB013489
Biomphalaria glabrata
BGLB013489
N
0.442
ASIS014204
Anopheles sinensis
ASIS014204
N
0.442
PEQ_0000212901
Parascaris equorum
PEQ_0000212901
N
0.442
H101_08199
Trichophyton interdigitale
H101_08199
N
0.440
RSKR_0000394100
Rhabditophanes kr3021
RSKR_0000394100
N
0.440
XM_002306945.1
Populus trichocarpa
POPTR_0005s27390
I
0.433
GRMZM2G144398
Zea mays
GRMZM2G144398
N
0.433
orange1.1g029982m.g
Citrus sinensis
orange1.1g029982m.g
I
0.433
Ciclev10033714m.g
Citrus clementina
Ciclev10033714m.g
I
0.433
GLYMA01G03580
Glycine max
GLYMA01G03580
I
0.433
GLYMA04G10125
Glycine max
GLYMA04G10125
I
0.433
TCNE_0000520101
Toxocara canis
TCNE_0000520101
N
0.426
OESDEN_18796
Oesophagostomum dentatum
OESDEN_18796
N
0.425
ACAC_0000798501
Angiostrongylus cantonensis
ACAC_0000798501
N
0.418
ACOC_0001190001
Angiostrongylus costaricensis
ACOC_0001190001
N
0.418
cassava43469.valid.m1
Manihot esculenta
cassava43469.valid.m1
I
0.417
Cucsa.302100
Cucumis sativus
Cucsa.302100
I
0.417
cassava30083.valid.m1
Manihot esculenta
cassava30083.valid.m1
I
0.417
cassava17722.valid.m1
Manihot esculenta
cassava17722.valid.m1
I
0.417
mgf003166m
Mimulus guttatus
mgf003166m
I
0.417
mgf011463m
Mimulus guttatus
mgf011463m
I
0.417
Cucsa.320600
Cucumis sativus
Cucsa.320600
I
0.417
Cagra.0537s0004
Capsella grandiflora
Cagra.0537s0004
I
0.417
Bostr.10273s0455
Boechera stricta
Bostr.10273s0455
I
0.417
mgf015806m
Mimulus guttatus
mgf015806m
I
0.417
Ca_25981
Cicer arietinum
Ca_25981
I
0.417
TRIUR3_29073
Triticum urartu
TRIUR3_29073
I
0.417
VIT_02s0154g00070
Vitis vinifera
VIT_02s0154g00070
I
0.417
TRIUR3_27479
Triticum urartu
TRIUR3_27479
I
0.417
Traes_6DL_59DB06B9F
Triticum aestivum
Traes_6DL_59DB06B9F
I
0.417
Traes_6AL_2983D4EB6
Triticum aestivum
Traes_6AL_2983D4EB6
I
0.417
Traes_6BL_3F8DB6043
Triticum aestivum
Traes_6BL_3F8DB6043
I
0.417
VIT_15s0048g00550
Vitis vinifera
VIT_15s0048g00550
I
0.417
Carubv10021641m.g
Capsella rubella
Carubv10021641m.g
I
0.417
28200.m000191
Ricinus communis
28200.m000191
I
0.417
30174.m008839
Ricinus communis
30174.m008839
I
0.417
Pm023555
Prunus mume
Pm023555
I
0.417
Pm017846
Prunus mume
Pm017846
I
0.417
Cla011745
Citrullus lanatus
Cla011745
I
0.417
cassava13963.valid.m1
Manihot esculenta
cassava13963.valid.m1
I
0.417
Lus10010361.g
Linum usitatissimum
Lus10010361.g
I
0.417
Pavir.Gb00743
Panicum virgatum
Pavir.Gb00743
I
0.417
Pavir.Ib03707
Panicum virgatum
Pavir.Ib03707
I
0.417
Pavir.Ga00891
Panicum virgatum
Pavir.Ga00891
I
0.417
Pavir.Ab02534
Panicum virgatum
Pavir.Ab02534
I
0.417
orange1.1g028144m.g
Citrus sinensis
orange1.1g028144m.g
I
0.417
Pavir.Aa01223
Panicum virgatum
Pavir.Aa01223
I
0.417
SapurV1A.0033s0530
Salix purpurea
SapurV1A.0033s0530
I
0.417
SapurV1A.0217s0100
Salix purpurea
SapurV1A.0217s0100
I
0.417
Thhalv10019126m.g
Eutrema salsugineum
Thhalv10019126m.g
I
0.417
LjSGA_107961.1
Lotus japonicus
LjSGA_107961.1
I
0.417
SapurV1A.2672s0010
Salix purpurea
SapurV1A.2672s0010
I
0.417
SapurV1A.1275s0050
Salix purpurea
SapurV1A.1275s0050
I
0.417
SapurV1A.0634s0130
Salix purpurea
SapurV1A.0634s0130
I
0.417
orange1.1g027215m.g
Citrus sinensis
orange1.1g027215m.g
I
0.417
MDP0000298333
Malus domestica
MDP0000298333
I
0.417
gene32251-v1.0-hybrid
Fragaria vesca
gene32251-v1.0-hybrid
I
0.417
Gorai.001G174800
Gossypium raimondii
Gorai.001G174800
I
0.417
evm.TU.supercontig_29.121
Carica papaya
evm.TU.supercontig_29.121
I
0.417
evm.TU.supercontig_145.3
Carica papaya
evm.TU.supercontig_145.3
I
0.417
Ciclev10022170m.g
Citrus clementina
Ciclev10022170m.g
I
0.417
Eucgr.E01474
Eucalyptus grandis
Eucgr.E01474
I
0.417
Gorai.008G236500
Gossypium raimondii
Gorai.008G236500
I
0.417
Traes_2BL_8BEA9CE1B
Triticum aestivum
Traes_2BL_8BEA9CE1B
I
0.417
MDP0000192940
Malus domestica
MDP0000192940
I
0.417
MDP0000291729
Malus domestica
MDP0000291729
I
0.417
MDP0000171878
Malus domestica
MDP0000171878
I
0.417
MDP0000124879
Malus domestica
MDP0000124879
I
0.417
Lus10036496.g
Linum usitatissimum
Lus10036496.g
I
0.417
Ciclev10021834m.g
Citrus clementina
Ciclev10021834m.g
I
0.417
TCM_005549
Theobroma cacao
TCM_005549
I
0.417
LPERR04G16190
Leersia perrieri
LPERR04G16190
I
0.417
LPERR10G11580
Leersia perrieri
LPERR10G11580
I
0.417
MLOC_60897
Hordeum vulgare
MLOC_60897
I
0.417
LPERR02G20990
Leersia perrieri
LPERR02G20990
I
0.417
GSMUA_Achr8G11580_001
Musa acuminata
GSMUA_Achr8G11580_001
I
0.417
GSMUA_Achr11G03800_001
Musa acuminata
GSMUA_Achr11G03800_001
I
0.417
GSMUA_Achr11G17520_001
Musa acuminata
GSMUA_Achr11G17520_001
I
0.417
GSMUA_Achr7G07130_001
Musa acuminata
GSMUA_Achr7G07130_001
I
0.417
MLOC_70653
Hordeum vulgare
MLOC_70653
I
0.417
MTR_4g025900
Medicago truncatula
MTR_4g025900
I
0.417
OBART04G20010
Oryza barthii
OBART04G20010
I
0.417
OBART10G15260
Oryza barthii
OBART10G15260
I
0.417
OGLUM02G26190
Oryza glumaepatula
OGLUM02G26190
I
0.417
OBART02G25670
Oryza barthii
OBART02G25670
I
0.417
OB04G27010
Oryza brachyantha
OB04G27010
I
0.417
MTR_4g101660
Medicago truncatula
MTR_4g101660
I
0.417
OB02G33040
Oryza brachyantha
OB02G33040
I
0.417
GRMZM2G529859
Zea mays
GRMZM2G529859
I
0.417
GRMZM2G167824
Zea mays
GRMZM2G167824
I
0.417
BRADI3G50050
Brachypodium distachyon
BRADI3G50050
I
0.417
BRADI5G16910
Brachypodium distachyon
BRADI5G16910
I
0.417
F775_25525
Aegilops tauschii
F775_25525
I
0.417
BRADI3G30410
Brachypodium distachyon
BRADI3G30410
I
0.417
Bra004364
Brassica rapa
Bra004364
I
0.417
BGIOSGA014650
Oryza indica
BGIOSGA014650
I
0.417
Bo6g108630
Brassica oleracea
Bo6g108630
I
0.417
F775_27799
Aegilops tauschii
F775_27799
I
0.417
CRC
Arabidopsis lyrata
fgenesh2_kg.2__1172__AT1G69180.1
I
0.417
GRMZM2G005353
Zea mays
GRMZM2G005353
I
0.417
GRMZM2G054795
Zea mays
GRMZM2G054795
I
0.417
GRMZM2G074543
Zea mays
GRMZM2G074543
I
0.417
GLYMA17G14710
Glycine max
GLYMA17G14710
I
0.417
GLYMA05G04260
Glycine max
GLYMA05G04260
I
0.417
GLYMA01G33370
Glycine max
GLYMA01G33370
I
0.417
GLYMA03G03500
Glycine max
GLYMA03G03500
I
0.417
Traes_2AL_71DE02042
Triticum aestivum
Traes_2AL_71DE02042
I
0.417
OGLUM04G19890
Oryza glumaepatula
OGLUM04G19890
I
0.417
PRUPE_ppa010905mg
Prunus persica
PRUPE_ppa010905mg
I
0.417
PRUPE_ppa011209mg
Prunus persica
PRUPE_ppa011209mg
I
0.417
Sb01g017560
Sorghum bicolor
Sb01g017560
I
0.417
POPTR_0014s06210
Populus trichocarpa
POPTR_0014s06210
I
0.417
POPTR_0003s11230
Populus trichocarpa
POPTR_0003s11230
I
0.417
POPTR_0001s00240
Populus trichocarpa
POPTR_0001s00240
I
0.417
POPTR_0002s14600
Populus trichocarpa
POPTR_0002s14600
I
0.417
Sb04g033590
Sorghum bicolor
Sb04g033590
I
0.417
Sb06g023770
Sorghum bicolor
Sb06g023770
I
0.417
CRC
Arabidopsis thaliana
AT1G69180
D
0.417
TCM_016030
Theobroma cacao
TCM_016030
I
0.417
Traes_1DL_C5AF9D06A
Triticum aestivum
Traes_1DL_C5AF9D06A
I
0.417
Solyc01g091010.2
Solanum lycopersicum
Solyc01g091010.2
I
0.417
Si036788m.g
Setaria italica
Si036788m.g
I
0.417
Si010859m.g
Setaria italica
Si010859m.g
I
0.417
Si018146m.g
Setaria italica
Si018146m.g
I
0.417
PGSC0003DMG400025969
Solanum tuberosum
PGSC0003DMG400025969
I
0.417
YAB3
Oryza sativa
OS10G0508300
I
0.417
ONIVA04G18220
Oryza nivara
ONIVA04G18220
I
0.417
ONIVA04G21490
Oryza nivara
ONIVA04G21490
I
0.417
OPUNC02G23520
Oryza punctata
OPUNC02G23520
I
0.417
ONIVA02G28110
Oryza nivara
ONIVA02G28110
I
0.417
OMERI10G11950
Oryza meridionalis
OMERI10G11950
I
0.417
OLONG_018621
Oryza longistaminata
OLONG_018621
I
0.417
OMERI02G25190
Oryza meridionalis
OMERI02G25190
I
0.417
OMERI04G17000
Oryza meridionalis
OMERI04G17000
I
0.417
OPUNC10G13730
Oryza punctata
OPUNC10G13730
I
0.417
ORGLA02G0220100
Oryza glaberrima
ORGLA02G0220100
I
0.417
ORUFI10G16240
Oryza rufipogon
ORUFI10G16240
I
0.417
YAB4
Oryza sativa
OS02G0643200
I
0.417
YAB5
Oryza sativa
OS04G0536300
I
0.417
ORUFI04G21570
Oryza rufipogon
ORUFI04G21570
I
0.417
ORUFI02G27080
Oryza rufipogon
ORUFI02G27080
I
0.417
OGLUM10G15140
Oryza glumaepatula
OGLUM10G15140
I
0.417
ORGLA04G0171000
Oryza glaberrima
ORGLA04G0171000
I
0.417
PK25712.1
Cannabis sativa
PK25712.1
N
0.415