Gorai.008G147700 (Gossypium raimondii)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Gorai.008G147700 T334545_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMG-1
M02720_2.00 		Pisum sativum
STYGTDHTY
RADHACRAS		 SELEX
Mathelier et al.(2014)
MA0044.1 		0.457 0.580
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.008G147700.1 Sox 113 182
Gorai.008G147700.2 Sox 113 160

Links

Other Sox family TFs
Other Gossypium raimondii TFs

281 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TCM_007659 Theobroma cacao TCM_007659 I 0.661
HMGB6 Vitis vinifera VIT_10s0071g00870 I 0.649
SapurV1A.0766s0120 Salix purpurea SapurV1A.0766s0120 I 0.644
MDP0000205665 Malus domestica MDP0000205665 I 0.636
PRUPE_ppa026912mg Prunus persica PRUPE_ppa026912mg I 0.634
Pm006054 Prunus mume Pm006054 I 0.634
PDK_20s1709771g002 Phoenix dactylifera PDK_20s1709771g002 N 0.633
Cla009222 Citrullus lanatus Cla009222 I 0.615
Cucsa.300030 Cucumis sativus Cucsa.300030 I 0.615
HMGB6 Populus trichocarpa POPTR_0007s15320 I 0.607
Ciclev10016587m.g Citrus clementina Ciclev10016587m.g N 0.605
orange1.1g026850m.g Citrus sinensis orange1.1g026850m.g N 0.605
Eucgr.J00336 Eucalyptus grandis Eucgr.J00336 I 0.587
BGIOSGA027814 Oryza indica BGIOSGA027814 I 0.576
BGIOSGA027819 Oryza indica BGIOSGA027819 I 0.576
OBART08G00070 Oryza barthii OBART08G00070 I 0.576
OGLUM08G00090 Oryza glumaepatula OGLUM08G00090 I 0.576
OLONG_014445 Oryza longistaminata OLONG_014445 I 0.576
ONIVA08G00070 Oryza nivara ONIVA08G00070 I 0.576
OPUNC08G00150 Oryza punctata OPUNC08G00150 I 0.576
ORUFI08G00080 Oryza rufipogon ORUFI08G00080 I 0.576
OS08G0101100 Oryza sativa OS08G0101100 I 0.576
Cagra.0086s0060 Capsella grandiflora Cagra.0086s0060 I 0.574
Carubv10001858m.g Capsella rubella Carubv10001858m.g I 0.574
Si014434m.g Setaria italica Si014434m.g N 0.568
Bo2g160920 Brassica oleracea Bo2g160920 I 0.563
Bo9g014140 Brassica oleracea Bo9g014140 I 0.563
Bra026498 Brassica rapa Bra026498 I 0.563
Bra029371 Brassica rapa Bra029371 I 0.563
PDK_20s1355261g001 Phoenix dactylifera PDK_20s1355261g001 N 0.560
OB08G10120 Oryza brachyantha OB08G10120 N 0.557
AMTR_s00171p00070550 Amborella trichopoda AMTR_s00171p00070550 I 0.553
GSMUA_AchrUn_randomG05290_001 Musa acuminata GSMUA_AchrUn_randomG05290_001 I 0.552
SapurV1A.2780s0020 Salix purpurea SapurV1A.2780s0020 I 0.552
Bostr.10199s0131 Boechera stricta Bostr.10199s0131 N 0.546
PGSC0003DMG400025304 Solanum tuberosum PGSC0003DMG400025304 I 0.544
30131.m007272 Ricinus communis 30131.m007272 I 0.541
LDEC020995 Leptinotarsa decemlineata LDEC020995 N 0.541
evm.TU.supercontig_247.1 Carica papaya evm.TU.supercontig_247.1 N 0.539
BGIBMGA005288 Bombyx mori BGIBMGA005288 N 0.537
HMEL015307 Heliconius melpomene HMEL015307 N 0.537
Thhalv10004817m.g Eutrema salsugineum Thhalv10004817m.g N 0.537
Sb07g000230 Sorghum bicolor Sb07g000230 N 0.536
GLYMA10G43440 Glycine max GLYMA10G43440 I 0.535
GLYMA20G23370 Glycine max GLYMA20G23370 I 0.535
PK03866.1 Cannabis sativa PK03866.1 I 0.535
Pavir.J10680 Panicum virgatum Pavir.J10680 N 0.533
PPAI002521 Phlebotomus papatasi PPAI002521 N 0.533
GRMZM2G125648 Zea mays GRMZM2G125648 N 0.531
Ssrp Drosophila melanogaster FBgn0010278 N 0.528
GF12460 Drosophila ananassae FBgn0089497 N 0.528
GG19998 Drosophila erecta FBgn0112197 N 0.528
GD25013 Drosophila simulans FBgn0196325 N 0.528
GJ21774 Drosophila virilis FBgn0208892 N 0.528
GE11532 Drosophila yakuba FBgn0229332 N 0.528
MDOA007633 Musca domestica MDOA007633 N 0.528
GH21151 Drosophila grimshawi FBgn0128613 N 0.527
MTR_8g018100 Medicago truncatula MTR_8g018100 N 0.526
KGM_13851 Danaus plexippus KGM_13851 N 0.518
TCM_042534 Theobroma cacao TCM_042534 I 0.516
Ca_05351 Cicer arietinum Ca_05351 I 0.516
CpipJ_CPIJ020011 Culex pipiens CpipJ_CPIJ020011 I 0.513
CPIJ020011 Culex quinquefasciatus CPIJ020011 I 0.513
SNAPOd2T00000181001 Oikopleura dioica SNAPOd2T00000181001 N 0.509
chr5.CM0180.220.nd Lotus japonicus chr5.CM0180.220.nd I 0.508
orange1.1g029982m.g Citrus sinensis orange1.1g029982m.g I 0.507
orange1.1g030283m.g Citrus sinensis orange1.1g030283m.g I 0.507
GLYMA01G28820 Glycine max GLYMA01G28820 I 0.504
GLYMA03G08270 Glycine max GLYMA03G08270 I 0.504
Gorai.013G018500 Gossypium raimondii Gorai.013G018500 I 0.503
GI18750 Drosophila mojavensis FBgn0141489 N 0.501
Solyc04g008820.2 Solanum lycopersicum Solyc04g008820.2 I 0.501
Pavir.Ba01379 Panicum virgatum Pavir.Ba01379 I 0.501
MTR_1g115220 Medicago truncatula MTR_1g115220 I 0.500
mgf009124m Mimulus guttatus mgf009124m N 0.500
Aquca_004_00335 Aquilegia coerulea Aquca_004_00335 I 0.500
PRUPE_ppa011596mg Prunus persica PRUPE_ppa011596mg I 0.499
BRADI1G29730 Brachypodium distachyon BRADI1G29730 I 0.497
GRMZM5G834758 Zea mays GRMZM5G834758 I 0.497
OS04G0564600 Oryza sativa OS04G0564600 N 0.495
Si007288m.g Setaria italica Si007288m.g I 0.491
cassava23716.valid.m1 Manihot esculenta cassava23716.valid.m1 I 0.490
ASIS014204 Anopheles sinensis ASIS014204 N 0.488
LCUP005047 Lucilia cuprina LCUP005047 N 0.486
YQE_02071 Dendroctonus ponderosae YQE_02071 N 0.484
CpipJ_CPIJ002953 Culex pipiens CpipJ_CPIJ002953 N 0.483
CPIJ002953 Culex quinquefasciatus CPIJ002953 N 0.483
MLOC_6673 Hordeum vulgare MLOC_6673 N 0.483
Ssrp Drosophila pseudoobscura FBgn0078456 N 0.480
GL11071 Drosophila persimilis FBgn0148681 N 0.480
Aquca_035_00040 Aquilegia coerulea Aquca_035_00040 I 0.479
L798_13679 Zootermopsis nevadensis L798_13679 N 0.478
PGSC0003DMG400008501 Solanum tuberosum PGSC0003DMG400008501 I 0.478
evm.TU.supercontig_19.183 Carica papaya evm.TU.supercontig_19.183 I 0.477
orange1.1g031906m.g Citrus sinensis orange1.1g031906m.g I 0.476
Cflo_11824--XP_001120264.1_APIME Camponotus floridanus Cflo_11824--XP_001120264.1_APIME N 0.475
Hsal_00538--XP_001120264.1_APIME Harpegnathos saltator Hsal_00538--XP_001120264.1_APIME N 0.475
AAEL011425 Aedes aegypti AAEL011425 I 0.474
TC012866 Tribolium castaneum TC012866 N 0.471
NV31252 Nasonia vitripennis NV31252 N 0.470
gw1.106.59.1 Physcomitrella patens gw1.106.59.1 I 0.469
gw1.106.60.1 Physcomitrella patens gw1.106.60.1 I 0.469
GK22092 Drosophila willistoni FBgn0224077 N 0.467
Lus10041009.g Linum usitatissimum Lus10041009.g N 0.467
HCOI01912600 Haemonchus contortus HCOI01912600 I 0.467
HCOI01913300 Haemonchus contortus HCOI01913300 I 0.467
cassava1392.valid.m1 Manihot esculenta cassava1392.valid.m1 I 0.466
MTR_7g068280 Medicago truncatula MTR_7g068280 I 0.464
MTR_3g115580 Medicago truncatula MTR_3g115580 I 0.463
HMGB7 Arabidopsis thaliana AT5G23420 N 0.461
scaffold_602413.1 Arabidopsis lyrata scaffold_602413.1 N 0.461
GLYMA16G22060 Glycine max GLYMA16G22060 I 0.459
estExt_fgenesh1_pm.C_880025 Physcomitrella patens estExt_fgenesh1_pm.C_880025 I 0.459
HMGB1 Arabidopsis thaliana AT3G51880 I 0.458
Bo7g101270 Brassica oleracea Bo7g101270 I 0.458
HMGB1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5001281 I 0.458
GLYMA01G28253 Glycine max GLYMA01G28253 N 0.458
Bostr.6864s0060 Boechera stricta Bostr.6864s0060 I 0.458
Cagra.1043s0022 Capsella grandiflora Cagra.1043s0022 I 0.458
Thhalv10010751m.g Eutrema salsugineum Thhalv10010751m.g I 0.458
LPERR08G00140 Leersia perrieri LPERR08G00140 N 0.457
Hsal_03836--NA Harpegnathos saltator Hsal_03836--NA N 0.457
HMG-1 Pisum sativum Q41026_PEA D 0.457
AMAG_00757 Allomyces macrogynus AMAG_00757 N 0.456
AMAG_02260 Allomyces macrogynus AMAG_02260 N 0.456
Traes_7AL_959534EDB Triticum aestivum Traes_7AL_959534EDB I 0.456
Traes_7BL_871FCAF2F Triticum aestivum Traes_7BL_871FCAF2F I 0.456
Traes_7DL_824BFE90C Triticum aestivum Traes_7DL_824BFE90C I 0.456
TRIUR3_35367 Triticum urartu TRIUR3_35367 I 0.456
SapurV1A.0491s0160 Salix purpurea SapurV1A.0491s0160 N 0.456
Bra002073 Brassica rapa Bra002073 I 0.454
MLOC_77667 Hordeum vulgare MLOC_77667 I 0.454
LjT35D08.150.nd Lotus japonicus LjT35D08.150.nd I 0.454
29600.m000548 Ricinus communis 29600.m000548 I 0.453
Cucsa.067200 Cucumis sativus Cucsa.067200 I 0.452
Gorai.001G198900 Gossypium raimondii Gorai.001G198900 I 0.452
BGIOSGA016928 Oryza indica BGIOSGA016928 N 0.450
ENSMEUG00000004078 Macropus eugenii ENSMEUG00000004078 N 0.450
OB04G28810 Oryza brachyantha OB04G28810 N 0.450
OBART04G21800 Oryza barthii OBART04G21800 N 0.450
OGLUM04G21840 Oryza glumaepatula OGLUM04G21840 N 0.450
OMERI04G18350 Oryza meridionalis OMERI04G18350 N 0.450
ONIVA04G20340 Oryza nivara ONIVA04G20340 N 0.450
OPUNC04G19550 Oryza punctata OPUNC04G19550 N 0.450
ORGLA04G0188600 Oryza glaberrima ORGLA04G0188600 N 0.450
ORUFI04G23400 Oryza rufipogon ORUFI04G23400 N 0.450
SELMODRAFT_18312 Selaginella moellendorffii SELMODRAFT_18312 I 0.450
SELMODRAFT_18313 Selaginella moellendorffii SELMODRAFT_18313 I 0.450
AMTR_s00046p00227790 Amborella trichopoda AMTR_s00046p00227790 N 0.448
HMGB2 Arabidopsis thaliana AT1G20693 I 0.448
HMGB2 Arabidopsis lyrata fgenesh2_kg.1__2255__AT1G20693.2 I 0.448
Bostr.7128s0663 Boechera stricta Bostr.7128s0663 I 0.448
Cagra.6160s0028 Capsella grandiflora Cagra.6160s0028 I 0.448
Carubv10010586m.g Capsella rubella Carubv10010586m.g I 0.448
OSTLU_15773 Ostreococcus lucimarinus OSTLU_15773 N 0.446
estExt_fgenesh1_pg.C_2230007 Physcomitrella patens estExt_fgenesh1_pg.C_2230007 I 0.446
SapurV1A.0085s0030 Salix purpurea SapurV1A.0085s0030 I 0.446
WUBG_06999 Wuchereria bancrofti WUBG_06999 N 0.445
Bo8g081200 Brassica oleracea Bo8g081200 I 0.445
CBN04053 Caenorhabditis brenneri CBN04053 N 0.445
LOAG_08062 Loa loa LOAG_08062 N 0.445
Carubv10018109m.g Capsella rubella Carubv10018109m.g I 0.445
Lus10028298.g Linum usitatissimum Lus10028298.g I 0.445
0600010013 Ostreococcus tauri 0600010013 I 0.445
ALUE_0001190701 Ascaris lumbricoides ALUE_0001190701 N 0.445
GPUH_0002275001 Gongylonema pulchrum GPUH_0002275001 N 0.445
TCLT_0000071201 Thelazia callipaeda TCLT_0000071201 N 0.445
TCNE_0000520101 Toxocara canis TCNE_0000520101 N 0.445
fgenesh1_pg.scaffold_277000017 Physcomitrella patens fgenesh1_pg.scaffold_277000017 I 0.444
POPTR_0005s10440 Populus trichocarpa POPTR_0005s10440 I 0.442
mgf006113m Mimulus guttatus mgf006113m I 0.442
mgf008076m Mimulus guttatus mgf008076m I 0.442
mgf014518m Mimulus guttatus mgf014518m I 0.442
mgf016608m Mimulus guttatus mgf016608m I 0.442
Lus10040192.g Linum usitatissimum Lus10040192.g I 0.442
PRUPE_ppa007518mg Prunus persica PRUPE_ppa007518mg I 0.441
HMGB1 Vitis vinifera VIT_08s0007g02200 I 0.441
Pm002934 Prunus mume Pm002934 I 0.441
Eucgr.A00506 Eucalyptus grandis Eucgr.A00506 I 0.441
ENSMMUG00000031258 Macaca mulatta ENSMMUG00000031258 I 0.439
SELMODRAFT_175895 Selaginella moellendorffii SELMODRAFT_175895 I 0.439
SELMODRAFT_38818 Selaginella moellendorffii SELMODRAFT_38818 I 0.439
ACHR003271 Anopheles christyi ACHR003271 I 0.439
OESDEN_24828 Oesophagostomum dentatum OESDEN_24828 N 0.439
HMGB3 Arabidopsis thaliana AT1G20696 I 0.436
Bo7g061420 Brassica oleracea Bo7g061420 I 0.436
Bo8g070350 Brassica oleracea Bo8g070350 I 0.436
Bra025838 Brassica rapa Bra025838 I 0.436
Bra037266 Brassica rapa Bra037266 I 0.436
HMGB3 Arabidopsis lyrata fgenesh2_kg.1__2258__AT1G20696.3 I 0.436
HMGB4 Arabidopsis lyrata fgenesh2_kg.3__3350__AT2G17560.1 I 0.436
PRUPE_ppa012972mg Prunus persica PRUPE_ppa012972mg I 0.436
Bostr.18351s0219 Boechera stricta Bostr.18351s0219 I 0.436
Bostr.7128s0662 Boechera stricta Bostr.7128s0662 I 0.436
Cagra.1891s0017 Capsella grandiflora Cagra.1891s0017 I 0.436
Cagra.6160s0027 Capsella grandiflora Cagra.6160s0027 I 0.436
Carubv10012681m.g Capsella rubella Carubv10012681m.g I 0.436
Carubv10014808m.g Capsella rubella Carubv10014808m.g I 0.436
Eucgr.J02535 Eucalyptus grandis Eucgr.J02535 I 0.436
SapurV1A.0016s0600 Salix purpurea SapurV1A.0016s0600 I 0.436
Thhalv10022905m.g Eutrema salsugineum Thhalv10022905m.g I 0.436
ETH_00031100 Eimeria tenella ETH_00031100 I 0.436
GRMZM2G162284 Zea mays GRMZM2G162284 I 0.435
PGSC0003DMG400018685 Solanum tuberosum PGSC0003DMG400018685 I 0.435
mgf016363m Mimulus guttatus mgf016363m I 0.435
Bo7g014280 Brassica oleracea Bo7g014280 I 0.433
ADAC005122 Anopheles darlingi ADAC005122 N 0.432
AGAP012334 Anopheles gambiae AGAP012334 N 0.432
GSMUA_Achr11G07320_001 Musa acuminata GSMUA_Achr11G07320_001 I 0.432
GSMUA_Achr2G03630_001 Musa acuminata GSMUA_Achr2G03630_001 I 0.432
GSMUA_Achr9G21200_001 Musa acuminata GSMUA_Achr9G21200_001 I 0.432
GSMUA_AchrUn_randomG22010_001 Musa acuminata GSMUA_AchrUn_randomG22010_001 I 0.432
GUITHDRAFT_135067 Guillardia theta GUITHDRAFT_135067 N 0.432
Cla018386 Citrullus lanatus Cla018386 I 0.432
Aquca_015_00344 Aquilegia coerulea Aquca_015_00344 I 0.432
AALB010797 Anopheles albimanus AALB010797 N 0.432
AARA003413 Anopheles arabiensis AARA003413 N 0.432
ACHR003270 Anopheles christyi ACHR003270 N 0.432
ACOM026236 Anopheles coluzzii ACOM026236 N 0.432
ADIR000495 Anopheles dirus ADIR000495 N 0.432
AEPI002535 Anopheles epiroticus AEPI002535 N 0.432
AFUN009599 Anopheles funestus AFUN009599 N 0.432
AMAM007083 Anopheles maculatus AMAM007083 N 0.432
AMEC017787 Anopheles melas AMEC017787 N 0.432
AQUA002990 Anopheles quadriannulatus AQUA002990 N 0.432
fgenesh2_kg.6__1935__AT5G23420.1 Arabidopsis lyrata fgenesh2_kg.6__1935__AT5G23420.1 N 0.431
ENSCJAG00000005187 Callithrix jacchus ENSCJAG00000005187 I 0.430
Lus10035511.g Linum usitatissimum Lus10035511.g I 0.430
MTR_5g024180 Medicago truncatula MTR_5g024180 I 0.429
evm.TU.supercontig_11.167 Carica papaya evm.TU.supercontig_11.167 I 0.429
Gorai.002G263800 Gossypium raimondii Gorai.002G263800 I 0.429
HMGB4 Arabidopsis thaliana AT2G17560 I 0.426
MTR_7g082820 Medicago truncatula MTR_7g082820 I 0.426
Pm026798 Prunus mume Pm026798 I 0.426
CpipJ_CPIJ002952 Culex pipiens CpipJ_CPIJ002952 N 0.425
AAEL002381 Aedes aegypti AAEL002381 N 0.425
AAEL011414 Aedes aegypti AAEL011414 N 0.425
CPIJ002952 Culex quinquefasciatus CPIJ002952 N 0.425
Ca_19340 Cicer arietinum Ca_19340 I 0.425
mgf009330m Mimulus guttatus mgf009330m I 0.425
MDP0000607529 Malus domestica MDP0000607529 I 0.425
SapurV1A.0061s0170 Salix purpurea SapurV1A.0061s0170 I 0.425
OSTLU_31946 Ostreococcus lucimarinus OSTLU_31946 I 0.424
PLICRDRAFT_179042 Plicaturopsis crispa PLICRDRAFT_179042 I 0.424
KGM_13852 Danaus plexippus KGM_13852 I 0.423
MCINX001064 Melitaea cinxia MCINX001064 I 0.423
cgd2_2120 Cryptosporidium parvum cgd2_2120 N 0.423
Chro.20230 Cryptosporidium hominis Chro.20230 N 0.423
EDI_049480 Entamoeba dispar EDI_049480 N 0.423
PPAI002522 Phlebotomus papatasi PPAI002522 I 0.423
ENSOGAG00000026034 Otolemur garnettii ENSOGAG00000026034 I 0.422
cassava17389.m1 Manihot esculenta cassava17389.m1 I 0.422
OB06G35870 Oryza brachyantha OB06G35870 I 0.421
Sb10g030910 Sorghum bicolor Sb10g030910 I 0.421
29669.m000844 Ricinus communis 29669.m000844 I 0.421
PTRK_0001490800 Parastrongyloides trichosuri PTRK_0001490800 N 0.421
estExt_Genewise1Plus.C_51175 Fragilariopsis cylindrus estExt_Genewise1Plus.C_51175 N 0.420
Aquca_045_00054 Aquilegia coerulea Aquca_045_00054 I 0.420
Gorai.006G181900 Gossypium raimondii Gorai.006G181900 I 0.420
PDK_20s1306741g001 Phoenix dactylifera PDK_20s1306741g001 I 0.420
BTMF_0000420901 Brugia timori BTMF_0000420901 N 0.420
MDOA009531 Musca domestica MDOA009531 N 0.419
HmgZ Drosophila melanogaster FBgn0010228 I 0.418
HmgZ Drosophila yakuba FBgn0068145 I 0.418
GG20749 Drosophila erecta FBgn0112936 I 0.418
GH20784 Drosophila grimshawi FBgn0128247 I 0.418
GM15692 Drosophila sechellia FBgn0170608 I 0.418
GD25171 Drosophila simulans FBgn0196483 I 0.418
GK15658 Drosophila willistoni FBgn0217663 I 0.418
GB54571 Apis mellifera GB54571 N 0.418
Lus10012252.g Linum usitatissimum Lus10012252.g I 0.418
Lus10016025.g Linum usitatissimum Lus10016025.g I 0.418
PK14705.1 Cannabis sativa PK14705.1 I 0.417
AMTR_s00109p00094550 Amborella trichopoda AMTR_s00109p00094550 I 0.415
CBG04066 Caenorhabditis briggsae CBG04066 N 0.415
F775_27510 Aegilops tauschii F775_27510 I 0.415
MLOC_78556 Hordeum vulgare MLOC_78556 I 0.415
TRIUR3_13577 Triticum urartu TRIUR3_13577 I 0.415
TASK_0000475801 Taenia asiatica TASK_0000475801 N 0.415
TsM_000111500 Taenia solium TsM_000111500 N 0.415