AMTR_s00109p00094550 (Amborella trichopoda)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 AMTR_s00109p00094550 T326435_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMG-1
M02720_2.00 		Pisum sativum
STYGTDHTY
RADHACRAS		 SELEX
Mathelier et al.(2014)
MA0044.1 		0.514 0.594
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ERM98632 Sox 40 109

Links

Other Sox family TFs
Other Amborella trichopoda TFs

259 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
LPERR06G23570 Leersia perrieri LPERR06G23570 I 0.538
OBART06G28090 Oryza barthii OBART06G28090 I 0.538
OGLUM06G29480 Oryza glumaepatula OGLUM06G29480 I 0.538
OLONG_007465 Oryza longistaminata OLONG_007465 I 0.538
OMERI06G28030 Oryza meridionalis OMERI06G28030 I 0.538
ONIVA06G31070 Oryza nivara ONIVA06G31070 I 0.538
OPUNC06G25640 Oryza punctata OPUNC06G25640 I 0.538
ORGLA06G0238300 Oryza glaberrima ORGLA06G0238300 I 0.538
ORUFI06G30030 Oryza rufipogon ORUFI06G30030 I 0.538
OS06G0728000 Oryza sativa OS06G0728000 I 0.538
Si007288m.g Setaria italica Si007288m.g I 0.538
Pavir.Db00040 Panicum virgatum Pavir.Db00040 I 0.538
Pavir.J04920 Panicum virgatum Pavir.J04920 I 0.538
BRADI1G29730 Brachypodium distachyon BRADI1G29730 I 0.531
F775_27510 Aegilops tauschii F775_27510 I 0.531
GRMZM5G834758 Zea mays GRMZM5G834758 I 0.531
MLOC_78556 Hordeum vulgare MLOC_78556 I 0.531
OB06G35870 Oryza brachyantha OB06G35870 I 0.531
Sb10g030910 Sorghum bicolor Sb10g030910 I 0.531
TRIUR3_13577 Triticum urartu TRIUR3_13577 I 0.531
GSMUA_Achr11G07320_001 Musa acuminata GSMUA_Achr11G07320_001 I 0.525
GSMUA_Achr2G03630_001 Musa acuminata GSMUA_Achr2G03630_001 I 0.525
GSMUA_Achr9G21200_001 Musa acuminata GSMUA_Achr9G21200_001 I 0.525
GSMUA_AchrUn_randomG22010_001 Musa acuminata GSMUA_AchrUn_randomG22010_001 I 0.525
PDK_20s1437671g003 Phoenix dactylifera PDK_20s1437671g003 I 0.525
MTR_5g024180 Medicago truncatula MTR_5g024180 I 0.522
PRUPE_ppa007518mg Prunus persica PRUPE_ppa007518mg I 0.522
Pm002934 Prunus mume Pm002934 I 0.522
GSMUA_Achr2G19630_001 Musa acuminata GSMUA_Achr2G19630_001 I 0.521
MTR_7g068280 Medicago truncatula MTR_7g068280 I 0.519
mgf016363m Mimulus guttatus mgf016363m I 0.519
evm.TU.supercontig_11.167 Carica papaya evm.TU.supercontig_11.167 I 0.519
Bo7g014280 Brassica oleracea Bo7g014280 I 0.517
Bra002073 Brassica rapa Bra002073 I 0.517
HMG-1 Pisum sativum Q41026_PEA D 0.514
Gorai.013G018500 Gossypium raimondii Gorai.013G018500 I 0.514
HMGB2 Arabidopsis thaliana AT1G20693 I 0.512
HMGB2 Arabidopsis lyrata fgenesh2_kg.1__2255__AT1G20693.2 I 0.512
PGSC0003DMG400008501 Solanum tuberosum PGSC0003DMG400008501 I 0.512
HMGB1 Vitis vinifera VIT_08s0007g02200 I 0.512
Ca_10725 Cicer arietinum Ca_10725 I 0.512
Bostr.7128s0663 Boechera stricta Bostr.7128s0663 I 0.512
Cagra.6160s0028 Capsella grandiflora Cagra.6160s0028 I 0.512
Carubv10010586m.g Capsella rubella Carubv10010586m.g I 0.512
Eucgr.A00506 Eucalyptus grandis Eucgr.A00506 I 0.512
Gorai.002G263800 Gossypium raimondii Gorai.002G263800 I 0.512
Gorai.006G181900 Gossypium raimondii Gorai.006G181900 I 0.512
HMGB1 Arabidopsis thaliana AT3G51880 I 0.511
HMGB1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5001281 I 0.511
Bostr.6864s0060 Boechera stricta Bostr.6864s0060 I 0.511
Cagra.1043s0022 Capsella grandiflora Cagra.1043s0022 I 0.511
Carubv10018109m.g Capsella rubella Carubv10018109m.g I 0.511
Ca_19340 Cicer arietinum Ca_19340 I 0.509
LjT35D08.150.nd Lotus japonicus LjT35D08.150.nd I 0.509
MTR_3g115580 Medicago truncatula MTR_3g115580 I 0.507
Bo8g081200 Brassica oleracea Bo8g081200 I 0.506
MTR_7g082820 Medicago truncatula MTR_7g082820 I 0.506
Thhalv10010751m.g Eutrema salsugineum Thhalv10010751m.g I 0.506
AMTR_s00044p00160130 Amborella trichopoda AMTR_s00044p00160130 I 0.503
GLYMA01G28820 Glycine max GLYMA01G28820 I 0.502
GLYMA03G08270 Glycine max GLYMA03G08270 I 0.502
POPTR_0005s10440 Populus trichocarpa POPTR_0005s10440 I 0.502
Cla018386 Citrullus lanatus Cla018386 I 0.502
SapurV1A.0085s0030 Salix purpurea SapurV1A.0085s0030 I 0.502
Bo7g101270 Brassica oleracea Bo7g101270 I 0.501
Cucsa.067200 Cucumis sativus Cucsa.067200 I 0.501
chr5.CM0180.220.nd Lotus japonicus chr5.CM0180.220.nd I 0.501
HMGB4 Arabidopsis lyrata fgenesh2_kg.3__3350__AT2G17560.1 I 0.499
29600.m000548 Ricinus communis 29600.m000548 I 0.499
Bostr.18351s0219 Boechera stricta Bostr.18351s0219 I 0.499
Cagra.1891s0017 Capsella grandiflora Cagra.1891s0017 I 0.499
Carubv10014808m.g Capsella rubella Carubv10014808m.g I 0.499
GSMUA_Achr10G07270_001 Musa acuminata GSMUA_Achr10G07270_001 I 0.498
Lus10012252.g Linum usitatissimum Lus10012252.g I 0.496
Lus10016025.g Linum usitatissimum Lus10016025.g I 0.496
cassava42371.valid.m1 Manihot esculenta cassava42371.valid.m1 I 0.494
cassava42372.valid.m1 Manihot esculenta cassava42372.valid.m1 I 0.494
cassava42373.valid.m1 Manihot esculenta cassava42373.valid.m1 I 0.494
cassava44923.m1 Manihot esculenta cassava44923.m1 I 0.494
PK29786.1 Cannabis sativa PK29786.1 I 0.493
AMTR_s00078p00107740 Amborella trichopoda AMTR_s00078p00107740 I 0.492
Bra037266 Brassica rapa Bra037266 I 0.492
cassava24859.valid.m1 Manihot esculenta cassava24859.valid.m1 I 0.492
Thhalv10022905m.g Eutrema salsugineum Thhalv10022905m.g I 0.492
MDP0000607529 Malus domestica MDP0000607529 I 0.491
HMGB4 Arabidopsis thaliana AT2G17560 I 0.489
Bo1g006360 Brassica oleracea Bo1g006360 I 0.489
Bo7g117500 Brassica oleracea Bo7g117500 I 0.489
Bra011624 Brassica rapa Bra011624 I 0.489
Bra017723 Brassica rapa Bra017723 I 0.489
29701.m000600 Ricinus communis 29701.m000600 I 0.488
PK11149.1 Cannabis sativa PK11149.1 I 0.487
ENSMMUG00000031258 Macaca mulatta ENSMMUG00000031258 I 0.486
Cla023817 Citrullus lanatus Cla023817 I 0.486
Cucsa.272190 Cucumis sativus Cucsa.272190 I 0.486
gene20487-v1.0-hybrid Fragaria vesca gene20487-v1.0-hybrid I 0.486
HMGB3 Arabidopsis thaliana AT1G20696 I 0.485
TCM_021706 Theobroma cacao TCM_021706 I 0.485
TGME49_010410 Toxoplasma gondii TGME49_010410 I 0.485
NCLIV_043670 Neospora caninum NCLIV_043670 I 0.485
Thhalv10026524m.g Eutrema salsugineum Thhalv10026524m.g I 0.482
PGSC0003DMG400018685 Solanum tuberosum PGSC0003DMG400018685 I 0.481
GLYMA09G33070 Glycine max GLYMA09G33070 I 0.480
GLYMA16G22060 Glycine max GLYMA16G22060 I 0.480
Aquca_004_00335 Aquilegia coerulea Aquca_004_00335 I 0.480
Eucgr.J02535 Eucalyptus grandis Eucgr.J02535 I 0.480
Bo7g061420 Brassica oleracea Bo7g061420 I 0.479
Bo8g070350 Brassica oleracea Bo8g070350 I 0.479
HMGB3 Arabidopsis lyrata fgenesh2_kg.1__2258__AT1G20696.3 I 0.479
POPTR_0002s01000 Populus trichocarpa POPTR_0002s01000 I 0.479
XM_002306945.1 Populus trichocarpa POPTR_0005s27390 I 0.479
PRUPE_ppa011596mg Prunus persica PRUPE_ppa011596mg I 0.479
PRUPE_ppa012972mg Prunus persica PRUPE_ppa012972mg I 0.479
Cla009093 Citrullus lanatus Cla009093 I 0.479
Cucsa.323100 Cucumis sativus Cucsa.323100 I 0.479
Bostr.7128s0662 Boechera stricta Bostr.7128s0662 I 0.479
Cagra.6160s0027 Capsella grandiflora Cagra.6160s0027 I 0.479
Carubv10012681m.g Capsella rubella Carubv10012681m.g I 0.479
gene13043-v1.0-hybrid Fragaria vesca gene13043-v1.0-hybrid I 0.479
Gorai.005G114500 Gossypium raimondii Gorai.005G114500 I 0.479
Gorai.009G186800 Gossypium raimondii Gorai.009G186800 I 0.479
SapurV1A.0016s0600 Salix purpurea SapurV1A.0016s0600 I 0.479
SapurV1A.0266s0310 Salix purpurea SapurV1A.0266s0310 I 0.479
Thhalv10009371m.g Eutrema salsugineum Thhalv10009371m.g I 0.479
Ciclev10012868m.g Citrus clementina Ciclev10012868m.g I 0.478
orange1.1g030283m.g Citrus sinensis orange1.1g030283m.g I 0.478
BGIOSGA023639 Oryza indica BGIOSGA023639 I 0.477
ENSCJAG00000005187 Callithrix jacchus ENSCJAG00000005187 I 0.477
TCM_000068 Theobroma cacao TCM_000068 I 0.476
mgf014518m Mimulus guttatus mgf014518m I 0.475
Bra025838 Brassica rapa Bra025838 I 0.474
PGSC0003DMG400001567 Solanum tuberosum PGSC0003DMG400001567 I 0.474
Solyc02g082700.2 Solanum lycopersicum Solyc02g082700.2 I 0.474
TCM_034406 Theobroma cacao TCM_034406 I 0.474
mgf006113m Mimulus guttatus mgf006113m I 0.474
mgf008076m Mimulus guttatus mgf008076m I 0.474
mgf016608m Mimulus guttatus mgf016608m I 0.474
Ciclev10002782m.g Citrus clementina Ciclev10002782m.g I 0.474
Eucgr.F03571 Eucalyptus grandis Eucgr.F03571 I 0.474
Gorai.002G115100 Gossypium raimondii Gorai.002G115100 I 0.474
orange1.1g031906m.g Citrus sinensis orange1.1g031906m.g I 0.474
SapurV1A.0061s0170 Salix purpurea SapurV1A.0061s0170 I 0.474
SapurV1A.2780s0020 Salix purpurea SapurV1A.2780s0020 I 0.474
GLYMA10G43440 Glycine max GLYMA10G43440 I 0.473
GLYMA20G23370 Glycine max GLYMA20G23370 I 0.473
MTR_1g115220 Medicago truncatula MTR_1g115220 I 0.473
Ca_05351 Cicer arietinum Ca_05351 I 0.473
estExt_fgenesh1_pm.C_880025 Physcomitrella patens estExt_fgenesh1_pm.C_880025 I 0.472
mgf009330m Mimulus guttatus mgf009330m I 0.471
PRUPE_ppa012424mg Prunus persica PRUPE_ppa012424mg I 0.469
VIT_13s0067g00640 Vitis vinifera VIT_13s0067g00640 I 0.469
Pm018913 Prunus mume Pm018913 I 0.469
Pm026798 Prunus mume Pm026798 I 0.469
30170.m014386 Ricinus communis 30170.m014386 I 0.469
cassava18624.valid.m1 Manihot esculenta cassava18624.valid.m1 I 0.469
cassava18625.valid.m1 Manihot esculenta cassava18625.valid.m1 I 0.469
cassava18626.valid.m1 Manihot esculenta cassava18626.valid.m1 I 0.469
cassava35948.valid.m1 Manihot esculenta cassava35948.valid.m1 I 0.469
Aquca_045_00054 Aquilegia coerulea Aquca_045_00054 I 0.469
Gorai.001G198900 Gossypium raimondii Gorai.001G198900 I 0.469
MDP0000362980 Malus domestica MDP0000362980 I 0.469
MDP0000757111 Malus domestica MDP0000757111 I 0.469
PDK_20s1306741g001 Phoenix dactylifera PDK_20s1306741g001 I 0.469
MTR_8g073345 Medicago truncatula MTR_8g073345 I 0.467
SELMODRAFT_18312 Selaginella moellendorffii SELMODRAFT_18312 I 0.465
SELMODRAFT_18313 Selaginella moellendorffii SELMODRAFT_18313 I 0.465
Ca_09896 Cicer arietinum Ca_09896 I 0.465
gene18862-v1.0-hybrid Fragaria vesca gene18862-v1.0-hybrid I 0.465
MDP0000275042 Malus domestica MDP0000275042 I 0.465
BRADI4G37247 Brachypodium distachyon BRADI4G37247 I 0.464
VIT_04s0044g00110 Vitis vinifera VIT_04s0044g00110 I 0.464
VIT_18s0122g01190 Vitis vinifera VIT_18s0122g01190 I 0.464
gw1.106.59.1 Physcomitrella patens gw1.106.59.1 I 0.462
gw1.106.60.1 Physcomitrella patens gw1.106.60.1 I 0.462
Thhalv10009970m.g Eutrema salsugineum Thhalv10009970m.g I 0.462
Ca_04825 Cicer arietinum Ca_04825 I 0.459
evm.TU.supercontig_19.183 Carica papaya evm.TU.supercontig_19.183 I 0.459
chr1.CM0113.560.nc Lotus japonicus chr1.CM0113.560.nc I 0.459
Ciclev10026715m.g Citrus clementina Ciclev10026715m.g I 0.458
orange1.1g031973m.g Citrus sinensis orange1.1g031973m.g I 0.458
TCM_042534 Theobroma cacao TCM_042534 I 0.456
orange1.1g044275m.g Citrus sinensis orange1.1g044275m.g I 0.456
Traes_5BL_9CC98DD38 Triticum aestivum Traes_5BL_9CC98DD38 I 0.455
Traes_5DL_DD9491112 Triticum aestivum Traes_5DL_DD9491112 I 0.455
Aquca_015_00344 Aquilegia coerulea Aquca_015_00344 I 0.455
GLYMA04G01840 Glycine max GLYMA04G01840 I 0.454
GLYMA06G01970 Glycine max GLYMA06G01970 I 0.454
TTHERM_00257230 Tetrahymena thermophila TTHERM_00257230 N 0.454
MDP0000828844 Malus domestica MDP0000828844 I 0.451
PGSC0003DMG400001414 Solanum tuberosum PGSC0003DMG400001414 I 0.450
PGSC0003DMG400018099 Solanum tuberosum PGSC0003DMG400018099 I 0.450
Solyc02g087710.2 Solanum lycopersicum Solyc02g087710.2 I 0.450
PK27241.1 Cannabis sativa PK27241.1 I 0.450
MDP0000310093 Malus domestica MDP0000310093 I 0.449
PDK_20s1434871g001 Phoenix dactylifera PDK_20s1434871g001 I 0.449
SELMODRAFT_175895 Selaginella moellendorffii SELMODRAFT_175895 I 0.448
SELMODRAFT_38818 Selaginella moellendorffii SELMODRAFT_38818 I 0.448
Ciclev10032930m.g Citrus clementina Ciclev10032930m.g I 0.448
evm.TU.supercontig_365.4 Carica papaya evm.TU.supercontig_365.4 I 0.448
orange1.1g029982m.g Citrus sinensis orange1.1g029982m.g I 0.448
Bo5g030580 Brassica oleracea Bo5g030580 I 0.447
PRUPE_ppa002690mg Prunus persica PRUPE_ppa002690mg I 0.447
TCM_018380 Theobroma cacao TCM_018380 I 0.447
Ca_10804 Cicer arietinum Ca_10804 I 0.447
Ca_12487 Cicer arietinum Ca_12487 I 0.447
Pm015842 Prunus mume Pm015842 I 0.447
evm.TU.supercontig_26.174 Carica papaya evm.TU.supercontig_26.174 I 0.447
chr2.CM0225.40.nc Lotus japonicus chr2.CM0225.40.nc I 0.447
LjSGA_094514.1 Lotus japonicus LjSGA_094514.1 I 0.447
Sb02g032140 Sorghum bicolor Sb02g032140 I 0.446
Si031512m.g Setaria italica Si031512m.g I 0.446
Pavir.Ba01379 Panicum virgatum Pavir.Ba01379 I 0.446
Pavir.Bb02550 Panicum virgatum Pavir.Bb02550 I 0.446
PK18077.1 Cannabis sativa PK18077.1 I 0.444
OMERI09G14100 Oryza meridionalis OMERI09G14100 I 0.443
ONIVA09G20030 Oryza nivara ONIVA09G20030 I 0.443
ORGLA09G0150800 Oryza glaberrima ORGLA09G0150800 I 0.443
ORUFI09G20440 Oryza rufipogon ORUFI09G20440 I 0.443
OS09G0551600 Oryza sativa OS09G0551600 I 0.443
EuGene.1300010342 Micromonas sp RCC299 EuGene.1300010342 I 0.443
AMTR_s00029p00240750 Amborella trichopoda AMTR_s00029p00240750 I 0.442
POPTR_0010s19720 Populus trichocarpa POPTR_0010s19720 I 0.442
29669.m000844 Ricinus communis 29669.m000844 I 0.442
mgf001267m Mimulus guttatus mgf001267m I 0.440
gw1.199.74.1 Physcomitrella patens gw1.199.74.1 I 0.438
ENSMMUG00000010106 Macaca mulatta ENSMMUG00000010106 I 0.436
GRMZM2G066528 Zea mays GRMZM2G066528 I 0.436
LPERR09G14820 Leersia perrieri LPERR09G14820 I 0.436
OB09G25530 Oryza brachyantha OB09G25530 I 0.436
POPTR_0008s06730 Populus trichocarpa POPTR_0008s06730 I 0.436
TRIUR3_27273 Triticum urartu TRIUR3_27273 I 0.436
SapurV1A.0825s0160 Salix purpurea SapurV1A.0825s0160 I 0.436
Lus10035511.g Linum usitatissimum Lus10035511.g I 0.435
AEPI002536 Anopheles epiroticus AEPI002536 N 0.432
ENSCJAG00000031139 Callithrix jacchus ENSCJAG00000031139 I 0.431
HMGB5 Arabidopsis lyrata Al_scaffold_0007_498 I 0.430
Bostr.7867s1415 Boechera stricta Bostr.7867s1415 I 0.430
Cagra.2350s0098 Capsella grandiflora Cagra.2350s0098 I 0.427
Carubv10005973m.g Capsella rubella Carubv10005973m.g I 0.427
BATDEDRAFT_89692 Batrachochytrium dendrobatidis BATDEDRAFT_89692 I 0.426
MDP0000301546 Malus domestica MDP0000301546 I 0.426
Cla017295 Citrullus lanatus Cla017295 I 0.425
Cucsa.339070 Cucumis sativus Cucsa.339070 I 0.425
MTR_1g022345 Medicago truncatula MTR_1g022345 I 0.423
YALI0_C11671g Yarrowia lipolytica YALI0_C11671g I 0.423
ENSOGAG00000031524 Otolemur garnettii ENSOGAG00000031524 I 0.422
ATHMG Vitis vinifera VIT_14s0108g00040 I 0.421
HMGB6 Vitis vinifera VIT_10s0071g00870 I 0.420
Aquca_007_00897 Aquilegia coerulea Aquca_007_00897 I 0.419
SSRP1 Arabidopsis thaliana AT3G28730 I 0.416
ATHMG Arabidopsis lyrata scaffold_500854.1 I 0.416
Bostr.0556s0524 Boechera stricta Bostr.0556s0524 I 0.416
Cagra.0535s0005 Capsella grandiflora Cagra.0535s0005 I 0.416
Carubv10016819m.g Capsella rubella Carubv10016819m.g I 0.416
M437DRAFT_40541 Aureobasidium melanogenum M437DRAFT_40541 I 0.415
MYCFIDRAFT_57980 Pseudocercospora fijiensis MYCFIDRAFT_57980 I 0.415
PV09_01265 Verruconis gallopava PV09_01265 I 0.415
estExt_Genewise1Plus.C_80270 Mycosphaerella fijiensis estExt_Genewise1Plus.C_80270 I 0.415
Gorai.008G147700 Gossypium raimondii Gorai.008G147700 I 0.415