PK27241.1 (Cannabis sativa)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 PK27241.1 T334937_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMG-1
M02720_2.00 		Pisum sativum
STYGTDHTY
RADHACRAS		 SELEX
Mathelier et al.(2014)
MA0044.1 		0.445 0.594
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PK27241.1 Sox 55 124

Links

Other Sox family TFs
Other Cannabis sativa TFs

200 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29600.m000548 Ricinus communis 29600.m000548 I 0.610
evm.TU.supercontig_19.183 Carica papaya evm.TU.supercontig_19.183 I 0.518
Lus10028298.g Linum usitatissimum Lus10028298.g I 0.495
estExt_fgenesh1_pm.C_880025 Physcomitrella patens estExt_fgenesh1_pm.C_880025 I 0.494
gw1.106.59.1 Physcomitrella patens gw1.106.59.1 I 0.494
gw1.106.60.1 Physcomitrella patens gw1.106.60.1 I 0.494
Lus10040192.g Linum usitatissimum Lus10040192.g I 0.492
MTR_1g115220 Medicago truncatula MTR_1g115220 I 0.491
TCM_042534 Theobroma cacao TCM_042534 I 0.491
VIT_04s0044g00110 Vitis vinifera VIT_04s0044g00110 I 0.491
VIT_18s0122g01190 Vitis vinifera VIT_18s0122g01190 I 0.491
Cucsa.067200 Cucumis sativus Cucsa.067200 I 0.491
Aquca_045_00054 Aquilegia coerulea Aquca_045_00054 I 0.491
PDK_20s1306741g001 Phoenix dactylifera PDK_20s1306741g001 I 0.491
PRUPE_ppa012424mg Prunus persica PRUPE_ppa012424mg I 0.485
Pm018913 Prunus mume Pm018913 I 0.485
cassava24859.valid.m1 Manihot esculenta cassava24859.valid.m1 I 0.485
Gorai.013G018500 Gossypium raimondii Gorai.013G018500 I 0.485
MDP0000362980 Malus domestica MDP0000362980 I 0.485
MDP0000757111 Malus domestica MDP0000757111 I 0.485
TCM_000068 Theobroma cacao TCM_000068 I 0.484
PGSC0003DMG400001567 Solanum tuberosum PGSC0003DMG400001567 I 0.481
Solyc02g082700.2 Solanum lycopersicum Solyc02g082700.2 I 0.481
Cla009093 Citrullus lanatus Cla009093 I 0.481
Cucsa.323100 Cucumis sativus Cucsa.323100 I 0.481
Eucgr.F03571 Eucalyptus grandis Eucgr.F03571 I 0.481
GLYMA01G28820 Glycine max GLYMA01G28820 I 0.480
GLYMA03G08270 Glycine max GLYMA03G08270 I 0.480
GSMUA_Achr11G07320_001 Musa acuminata GSMUA_Achr11G07320_001 I 0.480
GSMUA_Achr2G03630_001 Musa acuminata GSMUA_Achr2G03630_001 I 0.480
GSMUA_Achr9G21200_001 Musa acuminata GSMUA_Achr9G21200_001 I 0.480
GSMUA_AchrUn_randomG22010_001 Musa acuminata GSMUA_AchrUn_randomG22010_001 I 0.480
PGSC0003DMG400008501 Solanum tuberosum PGSC0003DMG400008501 I 0.480
HMGB1 Vitis vinifera VIT_08s0007g02200 I 0.480
Cla018386 Citrullus lanatus Cla018386 I 0.480
Eucgr.A00506 Eucalyptus grandis Eucgr.A00506 I 0.480
Eucgr.J02535 Eucalyptus grandis Eucgr.J02535 I 0.476
POPTR_0002s01000 Populus trichocarpa POPTR_0002s01000 I 0.475
XM_002306945.1 Populus trichocarpa POPTR_0005s27390 I 0.475
TCM_034406 Theobroma cacao TCM_034406 I 0.475
30170.m014386 Ricinus communis 30170.m014386 I 0.475
cassava18624.valid.m1 Manihot esculenta cassava18624.valid.m1 I 0.475
cassava18625.valid.m1 Manihot esculenta cassava18625.valid.m1 I 0.475
cassava18626.valid.m1 Manihot esculenta cassava18626.valid.m1 I 0.475
cassava35948.valid.m1 Manihot esculenta cassava35948.valid.m1 I 0.475
Ciclev10002782m.g Citrus clementina Ciclev10002782m.g I 0.475
gene13043-v1.0-hybrid Fragaria vesca gene13043-v1.0-hybrid I 0.475
Gorai.002G115100 Gossypium raimondii Gorai.002G115100 I 0.475
Gorai.005G114500 Gossypium raimondii Gorai.005G114500 I 0.475
Gorai.009G186800 Gossypium raimondii Gorai.009G186800 I 0.475
MDP0000275042 Malus domestica MDP0000275042 I 0.475
orange1.1g031906m.g Citrus sinensis orange1.1g031906m.g I 0.475
SapurV1A.0266s0310 Salix purpurea SapurV1A.0266s0310 I 0.475
Thhalv10009371m.g Eutrema salsugineum Thhalv10009371m.g I 0.475
Ca_19340 Cicer arietinum Ca_19340 I 0.474
mgf016363m Mimulus guttatus mgf016363m I 0.474
Gorai.002G263800 Gossypium raimondii Gorai.002G263800 I 0.474
GRMZM2G066528 Zea mays GRMZM2G066528 I 0.472
GRMZM2G162284 Zea mays GRMZM2G162284 I 0.472
Sb02g032140 Sorghum bicolor Sb02g032140 I 0.472
Si031512m.g Setaria italica Si031512m.g I 0.472
Pavir.Ba01379 Panicum virgatum Pavir.Ba01379 I 0.472
Pavir.Bb02550 Panicum virgatum Pavir.Bb02550 I 0.472
AMTR_s00044p00160130 Amborella trichopoda AMTR_s00044p00160130 I 0.470
PRUPE_ppa007518mg Prunus persica PRUPE_ppa007518mg I 0.470
SELMODRAFT_175895 Selaginella moellendorffii SELMODRAFT_175895 I 0.470
SELMODRAFT_38818 Selaginella moellendorffii SELMODRAFT_38818 I 0.470
Pm002934 Prunus mume Pm002934 I 0.470
orange1.1g044275m.g Citrus sinensis orange1.1g044275m.g I 0.470
evm.TU.supercontig_11.167 Carica papaya evm.TU.supercontig_11.167 I 0.468
BRADI1G29730 Brachypodium distachyon BRADI1G29730 I 0.466
GRMZM5G834758 Zea mays GRMZM5G834758 I 0.466
OB06G35870 Oryza brachyantha OB06G35870 I 0.466
Sb10g030910 Sorghum bicolor Sb10g030910 I 0.466
Gorai.006G181900 Gossypium raimondii Gorai.006G181900 I 0.466
mgf006113m Mimulus guttatus mgf006113m I 0.465
mgf008076m Mimulus guttatus mgf008076m I 0.465
mgf016608m Mimulus guttatus mgf016608m I 0.465
AMTR_s00029p00240750 Amborella trichopoda AMTR_s00029p00240750 I 0.464
GLYMA09G33070 Glycine max GLYMA09G33070 I 0.464
GLYMA16G22060 Glycine max GLYMA16G22060 I 0.464
MTR_5g024180 Medicago truncatula MTR_5g024180 I 0.464
POPTR_0010s19720 Populus trichocarpa POPTR_0010s19720 I 0.464
VIT_13s0067g00640 Vitis vinifera VIT_13s0067g00640 I 0.464
Ca_10725 Cicer arietinum Ca_10725 I 0.464
SapurV1A.0061s0170 Salix purpurea SapurV1A.0061s0170 I 0.464
SapurV1A.2780s0020 Salix purpurea SapurV1A.2780s0020 I 0.464
Ca_09896 Cicer arietinum Ca_09896 I 0.463
BRADI4G37247 Brachypodium distachyon BRADI4G37247 I 0.462
GLYMA10G43440 Glycine max GLYMA10G43440 I 0.462
GLYMA20G23370 Glycine max GLYMA20G23370 I 0.462
Traes_5BL_9CC98DD38 Triticum aestivum Traes_5BL_9CC98DD38 I 0.462
Traes_5DL_DD9491112 Triticum aestivum Traes_5DL_DD9491112 I 0.462
Ca_05351 Cicer arietinum Ca_05351 I 0.462
Aquca_015_00344 Aquilegia coerulea Aquca_015_00344 I 0.462
F775_27510 Aegilops tauschii F775_27510 I 0.460
LPERR06G23570 Leersia perrieri LPERR06G23570 I 0.460
MLOC_78556 Hordeum vulgare MLOC_78556 I 0.460
OBART06G28090 Oryza barthii OBART06G28090 I 0.460
OGLUM06G29480 Oryza glumaepatula OGLUM06G29480 I 0.460
OLONG_007465 Oryza longistaminata OLONG_007465 I 0.460
OMERI06G28030 Oryza meridionalis OMERI06G28030 I 0.460
ONIVA06G31070 Oryza nivara ONIVA06G31070 I 0.460
OPUNC06G25640 Oryza punctata OPUNC06G25640 I 0.460
ORGLA06G0238300 Oryza glaberrima ORGLA06G0238300 I 0.460
ORUFI06G30030 Oryza rufipogon ORUFI06G30030 I 0.460
OS06G0728000 Oryza sativa OS06G0728000 I 0.460
Si007288m.g Setaria italica Si007288m.g I 0.460
TRIUR3_13577 Triticum urartu TRIUR3_13577 I 0.460
Pavir.Db00040 Panicum virgatum Pavir.Db00040 I 0.460
Pavir.J04920 Panicum virgatum Pavir.J04920 I 0.460
POPTR_0008s06730 Populus trichocarpa POPTR_0008s06730 I 0.458
Ciclev10032930m.g Citrus clementina Ciclev10032930m.g I 0.457
orange1.1g029982m.g Citrus sinensis orange1.1g029982m.g I 0.457
GLYMA04G01840 Glycine max GLYMA04G01840 I 0.455
GLYMA06G01970 Glycine max GLYMA06G01970 I 0.455
Cla023817 Citrullus lanatus Cla023817 I 0.455
Cucsa.272190 Cucumis sativus Cucsa.272190 I 0.455
gene20487-v1.0-hybrid Fragaria vesca gene20487-v1.0-hybrid I 0.455
GSMUA_Achr10G07270_001 Musa acuminata GSMUA_Achr10G07270_001 I 0.453
MTR_3g115580 Medicago truncatula MTR_3g115580 I 0.452
POPTR_0005s10440 Populus trichocarpa POPTR_0005s10440 I 0.452
mgf014518m Mimulus guttatus mgf014518m I 0.452
SapurV1A.0085s0030 Salix purpurea SapurV1A.0085s0030 I 0.452
SapurV1A.0825s0160 Salix purpurea SapurV1A.0825s0160 I 0.452
AMTR_s00109p00094550 Amborella trichopoda AMTR_s00109p00094550 I 0.450
Gorai.001G198900 Gossypium raimondii Gorai.001G198900 I 0.450
cassava17389.m1 Manihot esculenta cassava17389.m1 I 0.449
PK29786.1 Cannabis sativa PK29786.1 I 0.448
MTR_8g073345 Medicago truncatula MTR_8g073345 I 0.447
TCM_021706 Theobroma cacao TCM_021706 I 0.447
HMGB3 Arabidopsis thaliana AT1G20696 I 0.446
Bo7g061420 Brassica oleracea Bo7g061420 I 0.446
Bo8g070350 Brassica oleracea Bo8g070350 I 0.446
Bra025838 Brassica rapa Bra025838 I 0.446
HMGB3 Arabidopsis lyrata fgenesh2_kg.1__2258__AT1G20696.3 I 0.446
PGSC0003DMG400018685 Solanum tuberosum PGSC0003DMG400018685 I 0.446
PRUPE_ppa011596mg Prunus persica PRUPE_ppa011596mg I 0.446
PRUPE_ppa012972mg Prunus persica PRUPE_ppa012972mg I 0.446
Pm026798 Prunus mume Pm026798 I 0.446
mgf009330m Mimulus guttatus mgf009330m I 0.446
Bostr.7128s0662 Boechera stricta Bostr.7128s0662 I 0.446
Cagra.6160s0027 Capsella grandiflora Cagra.6160s0027 I 0.446
Carubv10012681m.g Capsella rubella Carubv10012681m.g I 0.446
Ciclev10012868m.g Citrus clementina Ciclev10012868m.g I 0.446
orange1.1g030283m.g Citrus sinensis orange1.1g030283m.g I 0.446
SapurV1A.0016s0600 Salix purpurea SapurV1A.0016s0600 I 0.446
PK11149.1 Cannabis sativa PK11149.1 I 0.446
MTR_7g068280 Medicago truncatula MTR_7g068280 I 0.445
HMG-1 Pisum sativum Q41026_PEA D 0.445
LjT35D08.150.nd Lotus japonicus LjT35D08.150.nd I 0.445
LPERR09G14820 Leersia perrieri LPERR09G14820 I 0.444
OB09G25530 Oryza brachyantha OB09G25530 I 0.444
TRIUR3_27273 Triticum urartu TRIUR3_27273 I 0.444
Aquca_004_00335 Aquilegia coerulea Aquca_004_00335 I 0.443
Ciclev10026715m.g Citrus clementina Ciclev10026715m.g I 0.443
orange1.1g031973m.g Citrus sinensis orange1.1g031973m.g I 0.443
evm.TU.supercontig_26.174 Carica papaya evm.TU.supercontig_26.174 I 0.440
HMGB1 Arabidopsis thaliana AT3G51880 I 0.439
Bo7g101270 Brassica oleracea Bo7g101270 I 0.439
Bo8g081200 Brassica oleracea Bo8g081200 I 0.439
HMGB1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5001281 I 0.439
Bostr.6864s0060 Boechera stricta Bostr.6864s0060 I 0.439
Cagra.1043s0022 Capsella grandiflora Cagra.1043s0022 I 0.439
Carubv10018109m.g Capsella rubella Carubv10018109m.g I 0.439
evm.TU.supercontig_365.4 Carica papaya evm.TU.supercontig_365.4 I 0.439
Thhalv10010751m.g Eutrema salsugineum Thhalv10010751m.g I 0.439
OMERI09G14100 Oryza meridionalis OMERI09G14100 I 0.437
ONIVA09G20030 Oryza nivara ONIVA09G20030 I 0.437
ORGLA09G0150800 Oryza glaberrima ORGLA09G0150800 I 0.437
ORUFI09G20440 Oryza rufipogon ORUFI09G20440 I 0.437
OS09G0551600 Oryza sativa OS09G0551600 I 0.437
HMGB2 Arabidopsis thaliana AT1G20693 I 0.436
Bo7g014280 Brassica oleracea Bo7g014280 I 0.436
HMGB2 Arabidopsis lyrata fgenesh2_kg.1__2255__AT1G20693.2 I 0.436
SELMODRAFT_18312 Selaginella moellendorffii SELMODRAFT_18312 I 0.436
SELMODRAFT_18313 Selaginella moellendorffii SELMODRAFT_18313 I 0.436
29701.m000600 Ricinus communis 29701.m000600 I 0.436
Bostr.7128s0663 Boechera stricta Bostr.7128s0663 I 0.436
Cagra.6160s0028 Capsella grandiflora Cagra.6160s0028 I 0.436
Carubv10010586m.g Capsella rubella Carubv10010586m.g I 0.436
MDP0000607529 Malus domestica MDP0000607529 I 0.436
29669.m000844 Ricinus communis 29669.m000844 I 0.435
Lus10035511.g Linum usitatissimum Lus10035511.g I 0.435
chr5.CM0180.220.nd Lotus japonicus chr5.CM0180.220.nd I 0.435
cassava42371.valid.m1 Manihot esculenta cassava42371.valid.m1 I 0.429
cassava42372.valid.m1 Manihot esculenta cassava42372.valid.m1 I 0.429
cassava42373.valid.m1 Manihot esculenta cassava42373.valid.m1 I 0.429
cassava44923.m1 Manihot esculenta cassava44923.m1 I 0.429
Lus10012252.g Linum usitatissimum Lus10012252.g I 0.429
Lus10016025.g Linum usitatissimum Lus10016025.g I 0.429
Bra002073 Brassica rapa Bra002073 I 0.427
SELMODRAFT_117986 Selaginella moellendorffii SELMODRAFT_117986 I 0.424
SELMODRAFT_75453 Selaginella moellendorffii SELMODRAFT_75453 I 0.424
gene20961-v1.0-hybrid Fragaria vesca gene20961-v1.0-hybrid I 0.423
HMGB4 Arabidopsis thaliana AT2G17560 I 0.419
Bo5g030580 Brassica oleracea Bo5g030580 I 0.419
EuGene.1300010342 Micromonas sp RCC299 EuGene.1300010342 I 0.419
BGIOSGA023639 Oryza indica BGIOSGA023639 I 0.418
gw1.199.74.1 Physcomitrella patens gw1.199.74.1 I 0.417