EuGene.1300010342 (Micromonas sp RCC299)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 EuGene.1300010342 T334484_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMG-1
M02720_2.00 		Pisum sativum
STYGTDHTY
RADHACRAS		 SELEX
Mathelier et al.(2014)
MA0044.1 		0.447 0.377
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
63692 Sox 551 619

Links

Other Sox family TFs
Other Micromonas sp RCC299 TFs

204 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TGME49_010410 Toxoplasma gondii TGME49_010410 I 0.509
NCLIV_043670 Neospora caninum NCLIV_043670 I 0.509
BATDEDRAFT_89692 Batrachochytrium dendrobatidis BATDEDRAFT_89692 I 0.506
PRUPE_ppa007518mg Prunus persica PRUPE_ppa007518mg I 0.483
Pm002934 Prunus mume Pm002934 I 0.483
PK11149.1 Cannabis sativa PK11149.1 I 0.483
Gorai.002G263800 Gossypium raimondii Gorai.002G263800 I 0.482
MDP0000310093 Malus domestica MDP0000310093 I 0.478
PRUPE_ppa002690mg Prunus persica PRUPE_ppa002690mg I 0.476
TCM_018380 Theobroma cacao TCM_018380 I 0.476
Ca_04825 Cicer arietinum Ca_04825 I 0.476
Cla023817 Citrullus lanatus Cla023817 I 0.476
Pm015842 Prunus mume Pm015842 I 0.476
Cucsa.272190 Cucumis sativus Cucsa.272190 I 0.476
gene20487-v1.0-hybrid Fragaria vesca gene20487-v1.0-hybrid I 0.476
Gorai.006G181900 Gossypium raimondii Gorai.006G181900 I 0.476
MDP0000301546 Malus domestica MDP0000301546 I 0.476
MDP0000828844 Malus domestica MDP0000828844 I 0.476
PK29786.1 Cannabis sativa PK29786.1 I 0.476
29600.m000548 Ricinus communis 29600.m000548 I 0.474
GLYMA01G28820 Glycine max GLYMA01G28820 I 0.473
GLYMA03G08270 Glycine max GLYMA03G08270 I 0.473
PGSC0003DMG400001414 Solanum tuberosum PGSC0003DMG400001414 I 0.470
PGSC0003DMG400018099 Solanum tuberosum PGSC0003DMG400018099 I 0.470
Solyc02g087710.2 Solanum lycopersicum Solyc02g087710.2 I 0.470
PDK_20s1437671g003 Phoenix dactylifera PDK_20s1437671g003 I 0.465
Bostr.0556s0524 Boechera stricta Bostr.0556s0524 I 0.456
PGSC0003DMG400008501 Solanum tuberosum PGSC0003DMG400008501 I 0.455
TCM_021706 Theobroma cacao TCM_021706 I 0.455
HMGB1 Vitis vinifera VIT_08s0007g02200 I 0.455
29701.m000600 Ricinus communis 29701.m000600 I 0.455
Cucsa.067200 Cucumis sativus Cucsa.067200 I 0.455
mgf016363m Mimulus guttatus mgf016363m I 0.455
Eucgr.A00506 Eucalyptus grandis Eucgr.A00506 I 0.455
evm.TU.supercontig_11.167 Carica papaya evm.TU.supercontig_11.167 I 0.455
SapurV1A.0061s0170 Salix purpurea SapurV1A.0061s0170 I 0.455
SapurV1A.2780s0020 Salix purpurea SapurV1A.2780s0020 I 0.455
PRUPE_ppa012424mg Prunus persica PRUPE_ppa012424mg I 0.451
Pm018913 Prunus mume Pm018913 I 0.451
MDP0000362980 Malus domestica MDP0000362980 I 0.451
MDP0000757111 Malus domestica MDP0000757111 I 0.451
GSMUA_Achr10G07270_001 Musa acuminata GSMUA_Achr10G07270_001 I 0.450
GSMUA_Achr11G07320_001 Musa acuminata GSMUA_Achr11G07320_001 I 0.450
GSMUA_Achr2G03630_001 Musa acuminata GSMUA_Achr2G03630_001 I 0.450
GSMUA_Achr9G21200_001 Musa acuminata GSMUA_Achr9G21200_001 I 0.450
GSMUA_AchrUn_randomG22010_001 Musa acuminata GSMUA_AchrUn_randomG22010_001 I 0.450
MTR_5g024180 Medicago truncatula MTR_5g024180 I 0.448
VIT_18s0122g01190 Vitis vinifera VIT_18s0122g01190 I 0.448
cassava42371.valid.m1 Manihot esculenta cassava42371.valid.m1 I 0.448
cassava42372.valid.m1 Manihot esculenta cassava42372.valid.m1 I 0.448
cassava42373.valid.m1 Manihot esculenta cassava42373.valid.m1 I 0.448
cassava44923.m1 Manihot esculenta cassava44923.m1 I 0.448
Ciclev10012868m.g Citrus clementina Ciclev10012868m.g I 0.448
Eucgr.F03571 Eucalyptus grandis Eucgr.F03571 I 0.448
Gorai.001G198900 Gossypium raimondii Gorai.001G198900 I 0.448
orange1.1g030283m.g Citrus sinensis orange1.1g030283m.g I 0.448
MTR_3g115580 Medicago truncatula MTR_3g115580 I 0.447
HMG-1 Pisum sativum Q41026_PEA D 0.447
chr1.CM0113.560.nc Lotus japonicus chr1.CM0113.560.nc I 0.447
Ca_19340 Cicer arietinum Ca_19340 I 0.446
Cla018386 Citrullus lanatus Cla018386 I 0.446
SSRP1 Arabidopsis thaliana AT3G28730 I 0.445
ATHMG Arabidopsis lyrata scaffold_500854.1 I 0.445
Cagra.0535s0005 Capsella grandiflora Cagra.0535s0005 I 0.445
Carubv10016819m.g Capsella rubella Carubv10016819m.g I 0.445
Thhalv10003803m.g Eutrema salsugineum Thhalv10003803m.g I 0.445
POPTR_0002s01000 Populus trichocarpa POPTR_0002s01000 I 0.444
XM_002306945.1 Populus trichocarpa POPTR_0005s27390 I 0.444
TCM_034406 Theobroma cacao TCM_034406 I 0.444
Ciclev10002782m.g Citrus clementina Ciclev10002782m.g I 0.444
evm.TU.supercontig_26.174 Carica papaya evm.TU.supercontig_26.174 I 0.444
Gorai.002G115100 Gossypium raimondii Gorai.002G115100 I 0.444
Gorai.005G114500 Gossypium raimondii Gorai.005G114500 I 0.444
Gorai.009G186800 Gossypium raimondii Gorai.009G186800 I 0.444
orange1.1g031906m.g Citrus sinensis orange1.1g031906m.g I 0.444
SapurV1A.0266s0310 Salix purpurea SapurV1A.0266s0310 I 0.444
AMTR_s00109p00094550 Amborella trichopoda AMTR_s00109p00094550 I 0.443
Mycgr3G90433 Zymoseptoria tritici Mycgr3G90433 I 0.443
fgenesh1_pg.C_chr_2000123 Mycosphaerella graminicola fgenesh1_pg.C_chr_2000123 I 0.443
gene01265-v1.0-hybrid Fragaria vesca gene01265-v1.0-hybrid I 0.443
PK18077.1 Cannabis sativa PK18077.1 I 0.442
BRADI1G29730 Brachypodium distachyon BRADI1G29730 I 0.439
F775_27510 Aegilops tauschii F775_27510 I 0.439
GRMZM5G834758 Zea mays GRMZM5G834758 I 0.439
H072_4754 Dactylellina haptotyla H072_4754 I 0.439
LPERR06G23570 Leersia perrieri LPERR06G23570 I 0.439
MLOC_78556 Hordeum vulgare MLOC_78556 I 0.439
OB06G35870 Oryza brachyantha OB06G35870 I 0.439
OBART06G28090 Oryza barthii OBART06G28090 I 0.439
OGLUM06G29480 Oryza glumaepatula OGLUM06G29480 I 0.439
OLONG_007465 Oryza longistaminata OLONG_007465 I 0.439
OMERI06G28030 Oryza meridionalis OMERI06G28030 I 0.439
ONIVA06G31070 Oryza nivara ONIVA06G31070 I 0.439
OPUNC06G25640 Oryza punctata OPUNC06G25640 I 0.439
ORGLA06G0238300 Oryza glaberrima ORGLA06G0238300 I 0.439
ORUFI06G30030 Oryza rufipogon ORUFI06G30030 I 0.439
OS06G0728000 Oryza sativa OS06G0728000 I 0.439
Sb10g030910 Sorghum bicolor Sb10g030910 I 0.439
Si007288m.g Setaria italica Si007288m.g I 0.439
TRIUR3_13577 Triticum urartu TRIUR3_13577 I 0.439
Pavir.Db00040 Panicum virgatum Pavir.Db00040 I 0.439
Pavir.J04920 Panicum virgatum Pavir.J04920 I 0.439
HMGB2 Arabidopsis thaliana AT1G20693 I 0.438
HMGB2 Arabidopsis lyrata fgenesh2_kg.1__2255__AT1G20693.2 I 0.438
Bostr.7128s0663 Boechera stricta Bostr.7128s0663 I 0.438
Cagra.6160s0028 Capsella grandiflora Cagra.6160s0028 I 0.438
Carubv10010586m.g Capsella rubella Carubv10010586m.g I 0.438
e_gw1.15.66.1 Micromonas pusilla e_gw1.15.66.1 N 0.437
YALI0_C11671g Yarrowia lipolytica YALI0_C11671g I 0.436
30170.m014386 Ricinus communis 30170.m014386 I 0.434
cassava18624.valid.m1 Manihot esculenta cassava18624.valid.m1 I 0.434
cassava18625.valid.m1 Manihot esculenta cassava18625.valid.m1 I 0.434
cassava18626.valid.m1 Manihot esculenta cassava18626.valid.m1 I 0.434
cassava35948.valid.m1 Manihot esculenta cassava35948.valid.m1 I 0.434
ATHMG Vitis vinifera VIT_14s0108g00040 I 0.433
PGUG_05245 Candida guilliermondii PGUG_05245 I 0.432
PGUG_05245 Meyerozyma guilliermondii PGUG_05245 I 0.432
mgf001267m Mimulus guttatus mgf001267m I 0.432
HPODL_03671 Ogataea parapolymorpha HPODL_03671 I 0.431
KUCA_T00001555001 Kuraishia capsulata KUCA_T00001555001 I 0.431
Ca_10804 Cicer arietinum Ca_10804 I 0.431
Ca_12487 Cicer arietinum Ca_12487 I 0.431
chr2.CM0225.40.nc Lotus japonicus chr2.CM0225.40.nc I 0.431
LjSGA_094514.1 Lotus japonicus LjSGA_094514.1 I 0.431
AMTR_s00078p00107740 Amborella trichopoda AMTR_s00078p00107740 I 0.430
Bo1g006360 Brassica oleracea Bo1g006360 I 0.430
Bo7g117500 Brassica oleracea Bo7g117500 I 0.430
Bra011624 Brassica rapa Bra011624 I 0.430
Bra017723 Brassica rapa Bra017723 I 0.430
GSMUA_Achr2G19630_001 Musa acuminata GSMUA_Achr2G19630_001 I 0.430
evm.TU.supercontig_211.6 Carica papaya evm.TU.supercontig_211.6 I 0.430
estExt_fgenesh1_pm.C_880025 Physcomitrella patens estExt_fgenesh1_pm.C_880025 I 0.428
gw1.106.59.1 Physcomitrella patens gw1.106.59.1 I 0.428
gw1.106.60.1 Physcomitrella patens gw1.106.60.1 I 0.428
MTR_7g068280 Medicago truncatula MTR_7g068280 I 0.427
gw1.199.74.1 Physcomitrella patens gw1.199.74.1 I 0.427
Ciclev10011266m.g Citrus clementina Ciclev10011266m.g I 0.427
orange1.1g006512m.g Citrus sinensis orange1.1g006512m.g I 0.427
Ca_10725 Cicer arietinum Ca_10725 I 0.426
29822.m003476 Ricinus communis 29822.m003476 I 0.424
cassava42041.valid.m1 Manihot esculenta cassava42041.valid.m1 I 0.424
AMTR_s00029p00240750 Amborella trichopoda AMTR_s00029p00240750 I 0.423
POPTR_0010s19720 Populus trichocarpa POPTR_0010s19720 I 0.423
VIT_13s0067g00640 Vitis vinifera VIT_13s0067g00640 I 0.423
Aquca_045_00054 Aquilegia coerulea Aquca_045_00054 I 0.423
Ciclev10032930m.g Citrus clementina Ciclev10032930m.g I 0.423
orange1.1g029982m.g Citrus sinensis orange1.1g029982m.g I 0.423
PDK_20s1306741g001 Phoenix dactylifera PDK_20s1306741g001 I 0.423
Eucgr.J02535 Eucalyptus grandis Eucgr.J02535 I 0.422
PGSC0003DMG400001567 Solanum tuberosum PGSC0003DMG400001567 I 0.421
Solyc02g082700.2 Solanum lycopersicum Solyc02g082700.2 I 0.421
VIT_04s0044g00110 Vitis vinifera VIT_04s0044g00110 I 0.421
cassava24859.valid.m1 Manihot esculenta cassava24859.valid.m1 I 0.421
HMGB1 Arabidopsis thaliana AT3G51880 I 0.420
Bo7g014280 Brassica oleracea Bo7g014280 I 0.420
Bo7g101270 Brassica oleracea Bo7g101270 I 0.420
Bra002073 Brassica rapa Bra002073 I 0.420
Bra037266 Brassica rapa Bra037266 I 0.420
HMGB1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5001281 I 0.420
HMGB4 Arabidopsis lyrata fgenesh2_kg.3__3350__AT2G17560.1 I 0.420
Bostr.18351s0219 Boechera stricta Bostr.18351s0219 I 0.420
Bostr.6864s0060 Boechera stricta Bostr.6864s0060 I 0.420
Cagra.1043s0022 Capsella grandiflora Cagra.1043s0022 I 0.420
Cagra.1891s0017 Capsella grandiflora Cagra.1891s0017 I 0.420
Carubv10014808m.g Capsella rubella Carubv10014808m.g I 0.420
Thhalv10010751m.g Eutrema salsugineum Thhalv10010751m.g I 0.420
Thhalv10022905m.g Eutrema salsugineum Thhalv10022905m.g I 0.420
PK27241.1 Cannabis sativa PK27241.1 I 0.419
Aquca_002_00505 Aquilegia coerulea Aquca_002_00505 I 0.418
POPTR_0008s06730 Populus trichocarpa POPTR_0008s06730 I 0.417
SapurV1A.0825s0160 Salix purpurea SapurV1A.0825s0160 I 0.417
Thhalv10026524m.g Eutrema salsugineum Thhalv10026524m.g I 0.417
LjT35D08.150.nd Lotus japonicus LjT35D08.150.nd I 0.417
GLYMA04G01840 Glycine max GLYMA04G01840 I 0.416
GLYMA06G01970 Glycine max GLYMA06G01970 I 0.416
TCM_000068 Theobroma cacao TCM_000068 I 0.416
Cla009093 Citrullus lanatus Cla009093 I 0.416
Cucsa.323100 Cucumis sativus Cucsa.323100 I 0.416
Ciclev10026715m.g Citrus clementina Ciclev10026715m.g I 0.416
evm.TU.supercontig_365.4 Carica papaya evm.TU.supercontig_365.4 I 0.416
gene13043-v1.0-hybrid Fragaria vesca gene13043-v1.0-hybrid I 0.416
Thhalv10009371m.g Eutrema salsugineum Thhalv10009371m.g I 0.416
HMGB3 Arabidopsis thaliana AT1G20696 I 0.415
AUEXF2481DRAFT_68224 Aureobasidium subglaciale AUEXF2481DRAFT_68224 I 0.415
Bo5g030580 Brassica oleracea Bo5g030580 I 0.415
Bo7g061420 Brassica oleracea Bo7g061420 I 0.415
Bo8g070350 Brassica oleracea Bo8g070350 I 0.415
Bra025838 Brassica rapa Bra025838 I 0.415
DOTSEDRAFT_74007 Dothistroma septosporum DOTSEDRAFT_74007 I 0.415
HMGB3 Arabidopsis lyrata fgenesh2_kg.1__2258__AT1G20696.3 I 0.415
KLTH0E14850g Lachancea thermotolerans KLTH0E14850g I 0.415
M437DRAFT_40541 Aureobasidium melanogenum M437DRAFT_40541 I 0.415
M438DRAFT_311243 Aureobasidium pullulans M438DRAFT_311243 I 0.415
MYCFIDRAFT_57980 Pseudocercospora fijiensis MYCFIDRAFT_57980 I 0.415
estExt_Genewise1Plus.C_80270 Mycosphaerella fijiensis estExt_Genewise1Plus.C_80270 I 0.415
Bostr.7128s0662 Boechera stricta Bostr.7128s0662 I 0.415
Cagra.6160s0027 Capsella grandiflora Cagra.6160s0027 I 0.415
Carubv10012681m.g Capsella rubella Carubv10012681m.g I 0.415
gene18862-v1.0-hybrid Fragaria vesca gene18862-v1.0-hybrid I 0.415
Lus10012252.g Linum usitatissimum Lus10012252.g I 0.415
Lus10016025.g Linum usitatissimum Lus10016025.g I 0.415
SapurV1A.0016s0600 Salix purpurea SapurV1A.0016s0600 I 0.415
Thhalv10009970m.g Eutrema salsugineum Thhalv10009970m.g I 0.415
KLTH0E14850g Kluyveromyces thermotolerans KLTH0E14850g I 0.415