cassava42041.valid.m1 (Manihot esculenta)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 cassava42041.valid.m1 T333938_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NHP6A
M01566_2.00 		Saccharomyces cerevisiae
NHRYWWWN
NWWWRYDN		 PBM
Zhu et al.(2009)
Nhp6a 		0.437 0.551
NHP6A
M08606_2.00 		Saccharomyces cerevisiae
DNDHNNWTATATADWRDNNDN
NHNNHYWHTATATAWNNDHNH		 Misc
DeBoer et al.(2011)
YPR052C_879 		0.437 0.551
NHP6B
M01565_2.00 		Saccharomyces cerevisiae
NNWHWRYDNN
NNHRYWDWNN		 PBM
Zhu et al.(2009)
Nhp6b 		0.431 0.536
NHP6B
M08603_2.00 		Saccharomyces cerevisiae
HNTHHNWWTATAWWWWRNDN
NHNYWWWWTATAWWNDDAND		 Misc
DeBoer et al.(2011)
YBR089C-A_792 		0.431 0.536
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava42041.valid.m1 Sox 230 298

Links

Other Sox family TFs
Other Manihot esculenta TFs

164 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29822.m003476 Ricinus communis 29822.m003476 I 0.733
PRUPE_ppa002690mg Prunus persica PRUPE_ppa002690mg I 0.660
TCM_018380 Theobroma cacao TCM_018380 I 0.660
Pm015842 Prunus mume Pm015842 I 0.660
MDP0000828844 Malus domestica MDP0000828844 I 0.649
Bra033055 Brassica rapa Bra033055 N 0.623
gene01265-v1.0-hybrid Fragaria vesca gene01265-v1.0-hybrid I 0.622
PK18077.1 Cannabis sativa PK18077.1 I 0.618
MDP0000310093 Malus domestica MDP0000310093 I 0.617
evm.TU.supercontig_211.6 Carica papaya evm.TU.supercontig_211.6 I 0.614
Ciclev10011266m.g Citrus clementina Ciclev10011266m.g I 0.611
orange1.1g006512m.g Citrus sinensis orange1.1g006512m.g I 0.611
chr2.CM0225.40.nc Lotus japonicus chr2.CM0225.40.nc I 0.610
LjSGA_094514.1 Lotus japonicus LjSGA_094514.1 I 0.610
SSRP1 Arabidopsis thaliana AT3G28730 I 0.607
Cagra.0535s0005 Capsella grandiflora Cagra.0535s0005 I 0.607
Carubv10016819m.g Capsella rubella Carubv10016819m.g I 0.607
Thhalv10003803m.g Eutrema salsugineum Thhalv10003803m.g I 0.607
Aquca_002_00505 Aquilegia coerulea Aquca_002_00505 I 0.604
Ca_10804 Cicer arietinum Ca_10804 I 0.603
Ca_12487 Cicer arietinum Ca_12487 I 0.603
Bostr.0556s0524 Boechera stricta Bostr.0556s0524 I 0.588
gene01264-v1.0-hybrid Fragaria vesca gene01264-v1.0-hybrid I 0.588
Cla017295 Citrullus lanatus Cla017295 I 0.585
Cucsa.339070 Cucumis sativus Cucsa.339070 I 0.585
ATHMG Arabidopsis lyrata scaffold_500854.1 I 0.577
GLYMA03G03771 Glycine max GLYMA03G03771 N 0.575
ATHMG Vitis vinifera VIT_14s0108g00040 I 0.574
MDP0000301546 Malus domestica MDP0000301546 I 0.573
MTR_1g022345 Medicago truncatula MTR_1g022345 I 0.570
PDK_20s1437671g003 Phoenix dactylifera PDK_20s1437671g003 I 0.570
PGSC0003DMG400001414 Solanum tuberosum PGSC0003DMG400001414 I 0.562
PGSC0003DMG400018099 Solanum tuberosum PGSC0003DMG400018099 I 0.562
Solyc02g087710.2 Solanum lycopersicum Solyc02g087710.2 I 0.562
estExt_fgenesh1_pm.C_130068 Coccomyxa subellipsoidea C169 estExt_fgenesh1_pm.C_130068 I 0.555
estExt_Genewise1.C_130158 Chlorella vulgaris estExt_Genewise1.C_130158 I 0.555
mgf001267m Mimulus guttatus mgf001267m I 0.552
estExt_Genewise1.C_510099 Volvox carteri estExt_Genewise1.C_510099 N 0.539
CHLREDRAFT_142283 Chlamydomonas reinhardtii CHLREDRAFT_142283 N 0.534
SPPG_05251 Spizellomyces punctatus SPPG_05251 I 0.532
Bo7g091510 Brassica oleracea Bo7g091510 N 0.527
Bra025350 Brassica rapa Bra025350 N 0.527
AMTR_s00078p00107740 Amborella trichopoda AMTR_s00078p00107740 I 0.524
GSMUA_Achr2G19630_001 Musa acuminata GSMUA_Achr2G19630_001 I 0.524
BOTBODRAFT_30512 Botryobasidium botryosum BOTBODRAFT_30512 N 0.521
estExt_Genewise1.C_10428 Volvox carteri estExt_Genewise1.C_10428 N 0.520
GLYMA01G33240 Glycine max GLYMA01G33240 I 0.506
Eucgr.I01920 Eucalyptus grandis Eucgr.I01920 N 0.506
YALI0_C11671g Yarrowia lipolytica YALI0_C11671g I 0.502
GLYMA13G05140 Glycine max GLYMA13G05140 I 0.499
HPODL_03671 Ogataea parapolymorpha HPODL_03671 I 0.473
SOCG_02294 Schizosaccharomyces octosporus SOCG_02294 I 0.472
SPOG_00531 Schizosaccharomyces cryophilus SPOG_00531 I 0.470
O9G_002262 Rozella allomycis O9G_002262 I 0.469
BATDEDRAFT_89692 Batrachochytrium dendrobatidis BATDEDRAFT_89692 I 0.468
MTR_5g082570 Medicago truncatula MTR_5g082570 I 0.468
CHLREDRAFT_189879 Chlamydomonas reinhardtii CHLREDRAFT_189879 N 0.464
CANTEDRAFT_110112 Candida tenuis CANTEDRAFT_110112 I 0.462
Kpol_1065p34 Vanderwaltozyma polyspora Kpol_1065p34 I 0.462
TPHA_0A03740 Tetrapisispora phaffii TPHA_0A03740 I 0.462
NCAS_0A11010 Naumovozyma castellii NCAS_0A11010 I 0.456
Scas_Contig667.17 Saccharomyces castellii Scas_Contig667.17 I 0.456
PGUG_05245 Candida guilliermondii PGUG_05245 I 0.454
PGUG_05245 Meyerozyma guilliermondii PGUG_05245 I 0.454
SJAG_03603 Schizosaccharomyces japonicus SJAG_03603 I 0.454
CNF04730 Cryptococcus neoformans CNF04730 I 0.451
L804_02852 Cryptococcus gattii L804_02852 I 0.451
Lus10018073.g Linum usitatissimum Lus10018073.g N 0.451
Lus10042065.g Linum usitatissimum Lus10042065.g N 0.451
GSTUM_00001197001 Tuber melanosporum GSTUM_00001197001 I 0.448
nhp6 Schizosaccharomyces pombe SPAC57A10.09c I 0.447
TGME49_010410 Toxoplasma gondii TGME49_010410 I 0.447
NCLIV_043670 Neospora caninum NCLIV_043670 I 0.447
KUCA_T00001555001 Kuraishia capsulata KUCA_T00001555001 I 0.446
Gorai.006G024900 Gossypium raimondii Gorai.006G024900 I 0.445
AACERI_AaceriADL310W Saccharomycetaceae sp ashbya aceri AACERI_AaceriADL310W I 0.444
AGOS_ADL310W Ashbya gossypii AGOS_ADL310W I 0.444
Ecym_7459 Eremothecium cymbalariae Ecym_7459 I 0.444
KNAG_0H00800 Kazachstania naganishii KNAG_0H00800 I 0.444
TBLA_0I02240 Tetrapisispora blattae TBLA_0I02240 I 0.444
PLICRDRAFT_46399 Plicaturopsis crispa PLICRDRAFT_46399 I 0.443
MDP0000165147 Malus domestica MDP0000165147 N 0.442
AOL_s00043g650 Arthrobotrys oligospora AOL_s00043g650 I 0.441
ANIA_02885 Aspergillus nidulans CADANIAG00010204 I 0.441
gw1.32.10.1 Bigelowiella natans gw1.32.10.1 N 0.441
H072_4754 Dactylellina haptotyla H072_4754 I 0.440
gw1.199.74.1 Physcomitrella patens gw1.199.74.1 I 0.439
CPAG_02417 Candida parapsilosis CPAG_02417 I 0.437
CORT_0E02670 Candida orthopsilosis CORT_0E02670 I 0.437
DOTSEDRAFT_74007 Dothistroma septosporum DOTSEDRAFT_74007 I 0.437
GNLVRS01_PISO0N04523g Millerozyma farinosa GNLVRS01_PISO0N04523g I 0.437
KLLA0_B12056g Kluyveromyces lactis KLLA0_B12056g I 0.437
KLTH0E14850g Lachancea thermotolerans KLTH0E14850g I 0.437
Kpol_376p1 Vanderwaltozyma polyspora Kpol_376p1 I 0.437
LALA0_S09e03686g Lachancea lanzarotensis LALA0_S09e03686g I 0.437
NCAS_0I01260 Naumovozyma castellii NCAS_0I01260 I 0.437
NDAI_0A05290 Naumovozyma dairenensis NDAI_0A05290 I 0.437
PV09_01265 Verruconis gallopava PV09_01265 I 0.437
SKUD_180604 Saccharomyces kudriavzevii SKUD_180604 I 0.437
SU7_3651 Saccharomyces arboricola SU7_3651 I 0.437
TDEL_0C04750 Torulaspora delbrueckii TDEL_0C04750 I 0.437
NHP6A Saccharomyces cerevisiae YPR052C D 0.437
ZBAI_00368 Zygosaccharomyces bailii ZBAI_00368 I 0.437
ZBAI_05520 Zygosaccharomyces bailii ZBAI_05520 I 0.437
ZYRO0C15752g Zygosaccharomyces rouxii ZYRO0C15752g I 0.437
Scas_Contig718.17 Saccharomyces castellii Scas_Contig718.17 I 0.437
22477_YPR052C Saccharomyces mikatae 22477_YPR052C I 0.437
25751_YPR052C Saccharomyces bayanus 25751_YPR052C I 0.437
KLTH0E14850g Kluyveromyces thermotolerans KLTH0E14850g I 0.437
Kwal_12539 Kluyveromyces waltii Kwal_12539 I 0.437
SAKL0B07150g Lachancea kluyveri SAKL0B07150g I 0.437
M437DRAFT_40541 Aureobasidium melanogenum M437DRAFT_40541 I 0.436
M438DRAFT_311243 Aureobasidium pullulans M438DRAFT_311243 I 0.436
CC1G_11882 Coprinopsis cinerea CC1G_11882 I 0.435
POPTR_0004s12290 Populus trichocarpa POPTR_0004s12290 I 0.434
AUEXF2481DRAFT_68224 Aureobasidium subglaciale AUEXF2481DRAFT_68224 I 0.431
CD36_41610 Candida dubliniensis CD36_41610 I 0.431
DEHA2D17710g Debaryomyces hansenii DEHA2D17710g I 0.431
G210_1137 Candida maltosa G210_1137 I 0.431
GNLVRS01_PISO0M04390g Millerozyma farinosa GNLVRS01_PISO0M04390g I 0.431
LELG_04337 Lodderomyces elongisporus LELG_04337 I 0.431
MYCFIDRAFT_57980 Pseudocercospora fijiensis MYCFIDRAFT_57980 I 0.431
Mycgr3G90433 Zymoseptoria tritici Mycgr3G90433 I 0.431
PICST_23779 Scheffersomyces stipitis PICST_23779 I 0.431
SEPMUDRAFT_150255 Sphaerulina musiva SEPMUDRAFT_150255 I 0.431
SKUD_201106 Saccharomyces kudriavzevii SKUD_201106 I 0.431
SPAPADRAFT_62621 Spathaspora passalidarum SPAPADRAFT_62621 I 0.431
SU7_0186 Saccharomyces arboricola SU7_0186 I 0.431
NHP6B Saccharomyces cerevisiae YBR089C-A D 0.431
estExt_Genewise1Plus.C_80270 Mycosphaerella fijiensis estExt_Genewise1Plus.C_80270 I 0.431
fgenesh1_pg.C_chr_2000123 Mycosphaerella graminicola fgenesh1_pg.C_chr_2000123 I 0.431
gww1.1.1.1342.1 Pichia stipitis gww1.1.1.1342.1 I 0.431
1377_YBR089C-A Saccharomyces paradoxus 1377_YBR089C-A I 0.431
2032_YBR089C-A Saccharomyces bayanus 2032_YBR089C-A I 0.431
906_YBR089C-A Saccharomyces mikatae 906_YBR089C-A I 0.431
BN7_5566 Wickerhamomyces ciferrii BN7_5566 I 0.430
PMAA_019170 Talaromyces marneffei PMAA_019170 I 0.427
TSTA_027170 Talaromyces stipitatus TSTA_027170 I 0.427
mgf024995m Mimulus guttatus mgf024995m I 0.427
PMAA_019170 Penicillium marneffei PMAA_019170 I 0.427
A1Q1_01571 Trichosporon asahii A1Q1_01571 I 0.424
TGME49_019830 Toxoplasma gondii TGME49_019830 N 0.424
NCLIV_060790 Neospora caninum NCLIV_060790 N 0.424
EuGene.1300010342 Micromonas sp RCC299 EuGene.1300010342 I 0.424
RO3G_07751 Rhizopus oryzae RO3G_07751 I 0.422
M407DRAFT_81488 Tulasnella calospora M407DRAFT_81488 I 0.422
e_gw1.1.2450.1 Mucor circinelloides e_gw1.1.2450.1 I 0.422
estExt_Genewise1Plus.C_11422 Mucor circinelloides estExt_Genewise1Plus.C_11422 I 0.422
MSY001_2636 Malassezia sympodialis MSY001_2636 I 0.419
PaG_04789 Pseudozyma aphidis PaG_04789 I 0.419
PAN0_004d2231 Pseudozyma antarctica PAN0_004d2231 I 0.419
PSEUBRA_SCAF4g05002 Pseudozyma brasiliensis PSEUBRA_SCAF4g05002 I 0.419
UM02364 Ustilago maydis UM02364 I 0.419
fgeneshDP_kg.C_scaffold_625000001 Dictyostelium purpureum fgeneshDP_kg.C_scaffold_625000001 I 0.419
EFA82179.1 Polysphondylium pallidum EFA82179.1 I 0.419
CAGL0H08541g Candida glabrata CAGL0H08541g I 0.418
KAFR_0G01620 Kazachstania africana KAFR_0G01620 I 0.418
17746 Aureococcus anophagefferens 17746 I 0.418
gene18862-v1.0-hybrid Fragaria vesca gene18862-v1.0-hybrid I 0.417
BN946_scf184999.g62 Trametes cinnabarina BN946_scf184999.g62 I 0.416
TPHA_0M01480 Tetrapisispora phaffii TPHA_0M01480 I 0.416
PIIN_05794 Piriformospora indica PIIN_05794 I 0.415
estExt_fgeneshPB_pg.C_360007 Phycomyces blakesleeanus estExt_fgeneshPB_pg.C_360007 I 0.415
PXEA_0001177801 Protopolystoma xenopodis PXEA_0001177801 N 0.415