Eucgr.I01920 (Eucalyptus grandis)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Eucgr.I01920 T334472_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Eucgr.I01920.1 Sox 556 624

Links

Other Sox family TFs
Other Eucalyptus grandis TFs

179 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Ocbimv22012197m.g Octopus bimaculoides Ocbimv22012197m.g I 0.571
ENSXMAG00000000362 Xiphophorus maculatus ENSXMAG00000000362 I 0.568
GLYMA01G33240 Glycine max GLYMA01G33240 I 0.549
CGI_10017717 Crassostrea gigas CGI_10017717 I 0.537
ENSAPLG00000003986 Anas platyrhynchos ENSAPLG00000003986 N 0.537
Hmgb1 Rattus norvegicus ENSRNOG00000029813 N 0.537
LotgiG109021 Lottia gigantea LotgiG109021 I 0.537
TMUE_s0011001600 Trichuris muris TMUE_s0011001600 I 0.537
TTRE_0000401801 Trichuris trichiura TTRE_0000401801 I 0.537
SMU15029818 Schmidtea mediterranea SMU15029818 I 0.536
ACYPI005775 Acyrthosiphon pisum ACYPI005775 I 0.535
ADAC003252 Anopheles darlingi ADAC003252 I 0.535
AGAP000281 Anopheles gambiae AGAP000281 I 0.535
BGIBMGA006848 Bombyx mori BGIBMGA006848 I 0.535
DAPPUDRAFT_19853 Daphnia pulex DAPPUDRAFT_19853 I 0.535
tox4a Gasterosteus aculeatus ENSGACG00000014107 I 0.535
GB43084 Apis mellifera GB43084 I 0.535
HMEL005034 Heliconius melpomene HMEL005034 I 0.535
ISCW018867 Ixodes scapularis ISCW018867 I 0.535
KGM_14572 Danaus plexippus KGM_14572 I 0.535
MCINX005468 Melitaea cinxia MCINX005468 I 0.535
NV10488 Nasonia vitripennis NV10488 I 0.535
RPRC000650 Rhodnius prolixus RPRC000650 I 0.535
TC012723 Tribolium castaneum TC012723 I 0.535
CLEC001918 Cimex lectularius CLEC001918 I 0.535
HHAL000823-PA Halyomorpha halys HHAL000823-PA I 0.535
AALB006415 Anopheles albimanus AALB006415 I 0.535
AARA010616 Anopheles arabiensis AARA010616 I 0.535
AATE016215 Anopheles atroparvus AATE016215 I 0.535
ACUA004409 Anopheles culicifacies ACUA004409 I 0.535
AFAF011136 Anopheles farauti AFAF011136 I 0.535
AMEC012857 Anopheles melas AMEC012857 I 0.535
AMEM006878 Anopheles merus AMEM006878 I 0.535
ASIS016667 Anopheles sinensis ASIS016667 I 0.535
ASTEI07799 Anopheles stephensi ASTEI07799 I 0.535
tox4b Danio rerio ENSDARG00000100163 I 0.534
ENSGGOG00000025016 Gorilla gorilla ENSGGOG00000025016 I 0.534
tox4.S Xenopus laevis XB-GENE-993810 I 0.534
ENSPFOG00000002336 Poecilia formosa ENSPFOG00000002336 N 0.528
ENSGMOG00000015161 Gadus morhua ENSGMOG00000015161 I 0.525
ISCW015985 Ixodes scapularis ISCW015985 N 0.522
SPU_002060 Strongylocentrotus purpuratus SPU_002060 N 0.522
Sakowv30024549m.g Saccoglossus kowalevskii Sakowv30024549m.g N 0.522
29822.m003476 Ricinus communis 29822.m003476 I 0.515
D918_09264 Trichuris suis D918_09264 N 0.515
TMUE_s0009009400 Trichuris muris TMUE_s0009009400 N 0.515
TTRE_0000108401 Trichuris trichiura TTRE_0000108401 N 0.515
hmgb2a Danio rerio ENSDARG00000029722 N 0.510
Myotis_brandtii_DAP3_10031965 Myotis brandtii Myotis_brandtii_DAP3_10031965 N 0.508
TTHERM_00216040 Tetrahymena thermophila TTHERM_00216040 N 0.507
cassava42041.valid.m1 Manihot esculenta cassava42041.valid.m1 I 0.506
nRc.2.0.1.g42996 Romanomermis culicivorax nRc.2.0.1.g42996 N 0.505
ENSONIG00000016627 Oreochromis niloticus ENSONIG00000016627 N 0.503
Cflo_00230--XP_624018.2_APIME Camponotus floridanus Cflo_00230--XP_624018.2_APIME N 0.503
fgenesh2_pg.scaffold_177000008 Branchiostoma floridae fgenesh2_pg.scaffold_177000008 N 0.503
fgenesh2_pg.scaffold_19000069 Branchiostoma floridae fgenesh2_pg.scaffold_19000069 N 0.503
Gorai.006G024900 Gossypium raimondii Gorai.006G024900 I 0.503
XP_002936155 Xenopus tropicalis XP_002936155 N 0.503
tox2 Gasterosteus aculeatus ENSGACG00000006914 N 0.501
ENSGMOG00000008081 Gadus morhua ENSGMOG00000008081 N 0.501
ENSMMUG00000014077 Macaca mulatta ENSMMUG00000014077 N 0.501
ENSONIG00000000284 Oreochromis niloticus ENSONIG00000000284 N 0.501
tox2 Oryzias latipes ENSORLG00000004818 N 0.501
tox4b Oryzias latipes ENSORLG00000008779 N 0.501
ENSPFOG00000008402 Poecilia formosa ENSPFOG00000008402 N 0.501
ENSSSCG00000023554 Sus scrofa ENSSSCG00000023554 N 0.501
ENSTGUG00000003811 Taeniopygia guttata ENSTGUG00000003811 N 0.501
tox4b Tetraodon nigroviridis ENSTNIG00000003691 N 0.501
tox2 Tetraodon nigroviridis ENSTNIG00000005683 N 0.501
tox4b Takifugu rubripes ENSTRUG00000002594 N 0.501
tox2 Takifugu rubripes ENSTRUG00000013848 N 0.501
ENSXMAG00000016763 Xiphophorus maculatus ENSXMAG00000016763 N 0.501
LCUP006200 Lucilia cuprina LCUP006200 N 0.499
EFV61455 Trichinella spiralis EFV61455 N 0.494
D917_02150 Trichinella nativa D917_02150 N 0.494
ENSCING00000009516 Ciona intestinalis ENSCING00000009516 N 0.491
ENSCSAVG00000009270 Ciona savignyi ENSCSAVG00000009270 N 0.491
ENSGMOG00000013406 Gadus morhua ENSGMOG00000013406 N 0.491
HelroG145107 Helobdella robusta HelroG145107 N 0.491
WUBG_03914 Wuchereria bancrofti WUBG_03914 N 0.490
Bm4188 Brugia malayi Bm4188 N 0.490
LOAG_18151 Loa loa LOAG_18151 N 0.490
EEL_0000223401 Elaeophora elaphi EEL_0000223401 N 0.490
GPUH_0000021901 Gongylonema pulchrum GPUH_0000021901 N 0.490
nAv.1.0.1.g02116 Acanthocheilonema viteae nAv.1.0.1.g02116 N 0.490
nDi.2.2.2.g11099 Dirofilaria immitis nDi.2.2.2.g11099 N 0.490
nLs.2.1.2.g04689 Litomosoides sigmodontis nLs.2.1.2.g04689 N 0.490
Ca_10804 Cicer arietinum Ca_10804 I 0.483
mgf001267m Mimulus guttatus mgf001267m I 0.474
ENSOANG00000000353 Ornithorhynchus anatinus ENSOANG00000000353 N 0.473
Ca_12487 Cicer arietinum Ca_12487 I 0.473
PK18077.1 Cannabis sativa PK18077.1 I 0.473
chr2.CM0225.40.nc Lotus japonicus chr2.CM0225.40.nc I 0.473
LjSGA_094514.1 Lotus japonicus LjSGA_094514.1 I 0.473
WBGene00236865 Onchocerca volvulus WBGene00236865 N 0.472
nOo.2.0.1.g12207 Onchocerca ochengi nOo.2.0.1.g12207 N 0.472
OFLC_0001222801 Onchocerca flexuosa OFLC_0001222801 N 0.472
AOL_s00076g81 Arthrobotrys oligospora AOL_s00076g81 I 0.471
GLYMA03G03771 Glycine max GLYMA03G03771 N 0.466
O9G_002262 Rozella allomycis O9G_002262 I 0.466
Cla017295 Citrullus lanatus Cla017295 I 0.458
Cucsa.339070 Cucumis sativus Cucsa.339070 I 0.458
MDOA008605 Musca domestica MDOA008605 N 0.458
RO3G_07543 Rhizopus oryzae RO3G_07543 I 0.457
Bra033055 Brassica rapa Bra033055 N 0.455
M408DRAFT_328926 Serendipita vermifera M408DRAFT_328926 I 0.455
Kpol_1065p34 Vanderwaltozyma polyspora Kpol_1065p34 I 0.451
tetur31g00660 Tetranychus urticae tetur31g00660 N 0.451
tetur31g00840 Tetranychus urticae tetur31g00840 N 0.451
TPHA_0A03740 Tetrapisispora phaffii TPHA_0A03740 I 0.451
OIDMADRAFT_143526 Oidiodendron maius OIDMADRAFT_143526 I 0.450
estExt_fgenesh1_pm.C_130068 Coccomyxa subellipsoidea C169 estExt_fgenesh1_pm.C_130068 I 0.449
estExt_Genewise1.C_130158 Chlorella vulgaris estExt_Genewise1.C_130158 I 0.449
Bo7g091510 Brassica oleracea Bo7g091510 N 0.448
Bra025350 Brassica rapa Bra025350 N 0.448
SAPIO_CDS3355 Scedosporium apiospermum SAPIO_CDS3355 I 0.444
Aquca_002_00505 Aquilegia coerulea Aquca_002_00505 I 0.442
ENSTNIG00000002151 Tetraodon nigroviridis ENSTNIG00000002151 N 0.441
ACEP19638 Atta cephalotes ACEP19638 I 0.440
MTR_1g022345 Medicago truncatula MTR_1g022345 I 0.440
PIIN_05794 Piriformospora indica PIIN_05794 I 0.440
DRE_06603 Drechslerella stenobrocha DRE_06603 I 0.439
CpipJ_CPIJ003178 Culex pipiens CpipJ_CPIJ003178 N 0.438
CPIJ003178 Culex quinquefasciatus CPIJ003178 N 0.438
EFV52201 Trichinella spiralis EFV52201 N 0.438
GSTUM_00011974001 Tuber melanosporum GSTUM_00011974001 I 0.438
L798_00437 Zootermopsis nevadensis L798_00437 N 0.438
tetur31g01070 Tetranychus urticae tetur31g01070 N 0.438
AEPI010254 Anopheles epiroticus AEPI010254 N 0.438
AFUN005717 Anopheles funestus AFUN005717 N 0.438
AMAM014030 Anopheles maculatus AMAM014030 N 0.438
AMIN005634 Anopheles minimus AMIN005634 N 0.438
D918_03887 Trichuris suis D918_03887 N 0.438
ENSOGAG00000011763 Otolemur garnettii ENSOGAG00000011763 N 0.435
PRUPE_ppa002690mg Prunus persica PRUPE_ppa002690mg I 0.434
TCM_018380 Theobroma cacao TCM_018380 I 0.434
Pm015842 Prunus mume Pm015842 I 0.434
AACERI_AaceriADL310W Saccharomycetaceae sp ashbya aceri AACERI_AaceriADL310W I 0.432
AGOS_ADL310W Ashbya gossypii AGOS_ADL310W I 0.432
Ecym_7459 Eremothecium cymbalariae Ecym_7459 I 0.432
L596_g21045 Steinernema carpocapsae L596_g21045 I 0.431
AMTR_s00078p00107740 Amborella trichopoda AMTR_s00078p00107740 I 0.430
GSMUA_Achr2G19630_001 Musa acuminata GSMUA_Achr2G19630_001 I 0.430
MDP0000828844 Malus domestica MDP0000828844 I 0.428
BTMF_0001006201 Brugia timori BTMF_0001006201 I 0.428
BN7_5566 Wickerhamomyces ciferrii BN7_5566 I 0.427
POPTR_0004s12290 Populus trichocarpa POPTR_0004s12290 I 0.427
CPAG_02417 Candida parapsilosis CPAG_02417 I 0.426
CORT_0E02670 Candida orthopsilosis CORT_0E02670 I 0.426
ENSMMUG00000002541 Macaca mulatta ENSMMUG00000002541 I 0.426
GNLVRS01_PISO0N04523g Millerozyma farinosa GNLVRS01_PISO0N04523g I 0.426
EFV62220 Trichinella spiralis EFV62220 N 0.425
Kpol_376p1 Vanderwaltozyma polyspora Kpol_376p1 I 0.425
RO3G_07013 Rhizopus oryzae RO3G_07013 I 0.424
ATHMG Vitis vinifera VIT_14s0108g00040 I 0.424
L892_g13433 Steinernema scapterisci L892_g13433 I 0.423
MBM_02410 Marssonina brunnea MBM_02410 I 0.422
SBOR_0403 Sclerotinia borealis SBOR_0403 I 0.422
SS1G_04584 Sclerotinia sclerotiorum SS1G_04584 I 0.422
MESCA003479 Megaselia scalaris MESCA003479 N 0.421
PGTG_10028 Puccinia graminis PGTG_10028 I 0.421
PGTG_12120 Puccinia graminis PGTG_12120 I 0.421
Lus10018073.g Linum usitatissimum Lus10018073.g N 0.421
Lus10042065.g Linum usitatissimum Lus10042065.g N 0.421
mgf024995m Mimulus guttatus mgf024995m I 0.420
SPPG_05251 Spizellomyces punctatus SPPG_05251 I 0.419
CD36_41610 Candida dubliniensis CD36_41610 I 0.419
GNLVRS01_PISO0M04390g Millerozyma farinosa GNLVRS01_PISO0M04390g I 0.419
PICST_23779 Scheffersomyces stipitis PICST_23779 I 0.419
SPAPADRAFT_62621 Spathaspora passalidarum SPAPADRAFT_62621 I 0.419
gww1.1.1.1342.1 Pichia stipitis gww1.1.1.1342.1 I 0.419
YALI0_C11671g Yarrowia lipolytica YALI0_C11671g I 0.418
L596_g8243 Steinernema carpocapsae L596_g8243 N 0.417
L892_g19322 Steinernema scapterisci L892_g19322 N 0.417
L893_g19156 Steinernema glaseri L893_g19156 N 0.417
L898_g14011 Steinernema monticolum L898_g14011 N 0.417
M7I_1578 Glarea lozoyensis M7I_1578 I 0.415
TCM_014800 Theobroma cacao TCM_014800 N 0.415
mgf006762m Mimulus guttatus mgf006762m N 0.415