Bra025350 (Brassica rapa)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 Bra025350 T326710_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Bra025350.1-P Sox 574 642

Links

Other Sox family TFs
Other Brassica rapa TFs

58 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo7g091510 Brassica oleracea Bo7g091510 N 0.709
Bra033055 Brassica rapa Bra033055 N 0.608
ATHMG Arabidopsis lyrata scaffold_500854.1 I 0.563
Bostr.0556s0524 Boechera stricta Bostr.0556s0524 I 0.552
Thhalv10003803m.g Eutrema salsugineum Thhalv10003803m.g I 0.537
Cagra.0535s0005 Capsella grandiflora Cagra.0535s0005 I 0.533
SSRP1 Arabidopsis thaliana AT3G28730 I 0.533
Carubv10016819m.g Capsella rubella Carubv10016819m.g I 0.533
cassava42041.valid.m1 Manihot esculenta cassava42041.valid.m1 I 0.527
29822.m003476 Ricinus communis 29822.m003476 I 0.519
mgf024995m Mimulus guttatus mgf024995m I 0.506
evm.TU.supercontig_211.6 Carica papaya evm.TU.supercontig_211.6 I 0.505
Lus10042065.g Linum usitatissimum Lus10042065.g N 0.494
Lus10018073.g Linum usitatissimum Lus10018073.g N 0.494
MTR_5g082570 Medicago truncatula MTR_5g082570 I 0.474
MDP0000828844 Malus domestica MDP0000828844 I 0.470
PIIN_05794 Piriformospora indica PIIN_05794 I 0.470
gene01264-v1.0-hybrid Fragaria vesca gene01264-v1.0-hybrid I 0.470
LjSGA_094514.1 Lotus japonicus LjSGA_094514.1 I 0.469
Ca_12487 Cicer arietinum Ca_12487 I 0.469
chr2.CM0225.40.nc Lotus japonicus chr2.CM0225.40.nc I 0.469
PK18077.1 Cannabis sativa PK18077.1 I 0.469
M408DRAFT_328926 Serendipita vermifera M408DRAFT_328926 I 0.468
Ca_10804 Cicer arietinum Ca_10804 I 0.466
Pm015842 Prunus mume Pm015842 I 0.464
PRUPE_ppa002690mg Prunus persica PRUPE_ppa002690mg I 0.464
ENSGMOG00000010503 Gadus morhua ENSGMOG00000010503 N 0.461
TCM_018380 Theobroma cacao TCM_018380 I 0.455
SELMODRAFT_159743 Selaginella moellendorffii SELMODRAFT_159743 I 0.452
SELMODRAFT_166865 Selaginella moellendorffii SELMODRAFT_166865 I 0.452
D915_02473 Fasciola hepatica D915_02473 N 0.450
Cla017295 Citrullus lanatus Cla017295 I 0.448
Cucsa.339070 Cucumis sativus Cucsa.339070 I 0.448
Eucgr.I01920 Eucalyptus grandis Eucgr.I01920 N 0.448
ATHMG Vitis vinifera VIT_14s0108g00040 I 0.447
MDP0000310093 Malus domestica MDP0000310093 I 0.446
PGSC0003DMG400001414 Solanum tuberosum PGSC0003DMG400001414 I 0.441
PGSC0003DMG400018099 Solanum tuberosum PGSC0003DMG400018099 I 0.441
Solyc02g087710.2 Solanum lycopersicum Solyc02g087710.2 I 0.441
GLYMA01G33240 Glycine max GLYMA01G33240 I 0.440
ECPE_0000536801 Echinostoma caproni ECPE_0000536801 N 0.440
orange1.1g006512m.g Citrus sinensis orange1.1g006512m.g I 0.437
Ciclev10011266m.g Citrus clementina Ciclev10011266m.g I 0.437
gene01265-v1.0-hybrid Fragaria vesca gene01265-v1.0-hybrid I 0.436
MTR_1g022345 Medicago truncatula MTR_1g022345 I 0.433
GLYMA03G03771 Glycine max GLYMA03G03771 N 0.433
estExt_Genewise1.C_10428 Volvox carteri estExt_Genewise1.C_10428 N 0.432
Aquca_002_00505 Aquilegia coerulea Aquca_002_00505 I 0.429
DRE_06603 Drechslerella stenobrocha DRE_06603 I 0.427
AOL_s00076g81 Arthrobotrys oligospora AOL_s00076g81 I 0.427
Hsal_13112--XP_624266.1_APIME Harpegnathos saltator Hsal_13112--XP_624266.1_APIME N 0.422
Cflo_05893--XP_624266.1_APIME Camponotus floridanus Cflo_05893--XP_624266.1_APIME N 0.422
SINV22588 Solenopsis invicta SINV22588 N 0.422
GB47837 Apis mellifera GB47837 N 0.422
tetur02g08250 Tetranychus urticae tetur02g08250 N 0.422
SSTP_0000790100 Strongyloides stercoralis SSTP_0000790100 N 0.421
HCOI01912600 Haemonchus contortus HCOI01912600 I 0.419
HCOI01913300 Haemonchus contortus HCOI01913300 I 0.419