GLYMA01G33240 (Glycine max)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 GLYMA01G33240 T330259_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NCU02819
M02490_2.00 		Neurospora crassa
NNHNNNNNRN
NYNNNNNDNN		 PBM
Weirauch et al.(2014)
pTH9672 		0.438 0.435
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GLYMA01G33240.1 Sox 556 624

Links

Other Sox family TFs
Other Glycine max TFs

124 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
LjSGA_094514.1 Lotus japonicus LjSGA_094514.1 I 0.637
chr2.CM0225.40.nc Lotus japonicus chr2.CM0225.40.nc I 0.637
Ca_12487 Cicer arietinum Ca_12487 I 0.630
PK18077.1 Cannabis sativa PK18077.1 I 0.624
Gorai.006G024900 Gossypium raimondii Gorai.006G024900 I 0.621
Ca_10804 Cicer arietinum Ca_10804 I 0.620
GLYMA03G03771 Glycine max GLYMA03G03771 N 0.597
Cucsa.339070 Cucumis sativus Cucsa.339070 I 0.592
Cla017295 Citrullus lanatus Cla017295 I 0.592
PRUPE_ppa002690mg Prunus persica PRUPE_ppa002690mg I 0.587
MTR_1g022345 Medicago truncatula MTR_1g022345 I 0.587
Pm015842 Prunus mume Pm015842 I 0.587
GLYMA13G05140 Glycine max GLYMA13G05140 I 0.583
MDP0000828844 Malus domestica MDP0000828844 I 0.582
TCM_018380 Theobroma cacao TCM_018380 I 0.578
mgf001267m Mimulus guttatus mgf001267m I 0.577
AMTR_s00078p00107740 Amborella trichopoda AMTR_s00078p00107740 I 0.566
GSMUA_Achr2G19630_001 Musa acuminata GSMUA_Achr2G19630_001 I 0.566
gene01264-v1.0-hybrid Fragaria vesca gene01264-v1.0-hybrid I 0.559
gene01265-v1.0-hybrid Fragaria vesca gene01265-v1.0-hybrid I 0.559
mgf024995m Mimulus guttatus mgf024995m I 0.558
orange1.1g006512m.g Citrus sinensis orange1.1g006512m.g I 0.550
Ciclev10011266m.g Citrus clementina Ciclev10011266m.g I 0.550
Eucgr.I01920 Eucalyptus grandis Eucgr.I01920 N 0.549
MDP0000310093 Malus domestica MDP0000310093 I 0.549
MTR_5g082570 Medicago truncatula MTR_5g082570 I 0.545
ATHMG Vitis vinifera VIT_14s0108g00040 I 0.541
MDP0000301546 Malus domestica MDP0000301546 I 0.535
Thhalv10003803m.g Eutrema salsugineum Thhalv10003803m.g I 0.534
evm.TU.supercontig_211.6 Carica papaya evm.TU.supercontig_211.6 I 0.533
Carubv10016819m.g Capsella rubella Carubv10016819m.g I 0.530
SSRP1 Arabidopsis thaliana AT3G28730 I 0.530
Cagra.0535s0005 Capsella grandiflora Cagra.0535s0005 I 0.530
PGSC0003DMG400018099 Solanum tuberosum PGSC0003DMG400018099 I 0.519
PGSC0003DMG400001414 Solanum tuberosum PGSC0003DMG400001414 I 0.519
Solyc02g087710.2 Solanum lycopersicum Solyc02g087710.2 I 0.519
PDK_20s1437671g003 Phoenix dactylifera PDK_20s1437671g003 I 0.517
cassava42041.valid.m1 Manihot esculenta cassava42041.valid.m1 I 0.506
ATHMG Arabidopsis lyrata scaffold_500854.1 I 0.500
Bostr.0556s0524 Boechera stricta Bostr.0556s0524 I 0.500
29822.m003476 Ricinus communis 29822.m003476 I 0.498
OIDMADRAFT_143526 Oidiodendron maius OIDMADRAFT_143526 I 0.487
Gorai.007G078500 Gossypium raimondii Gorai.007G078500 N 0.484
BATDEDRAFT_89692 Batrachochytrium dendrobatidis BATDEDRAFT_89692 I 0.479
SOCG_02294 Schizosaccharomyces octosporus SOCG_02294 I 0.472
SPOG_00531 Schizosaccharomyces cryophilus SPOG_00531 I 0.470
SELMODRAFT_159743 Selaginella moellendorffii SELMODRAFT_159743 I 0.467
SELMODRAFT_166865 Selaginella moellendorffii SELMODRAFT_166865 I 0.467
TPHA_0A03740 Tetrapisispora phaffii TPHA_0A03740 I 0.462
Kpol_1065p34 Vanderwaltozyma polyspora Kpol_1065p34 I 0.462
SBOR_0403 Sclerotinia borealis SBOR_0403 I 0.459
MBM_02410 Marssonina brunnea MBM_02410 I 0.459
SS1G_04584 Sclerotinia sclerotiorum SS1G_04584 I 0.459
M7I_1578 Glarea lozoyensis M7I_1578 I 0.453
Bra033055 Brassica rapa Bra033055 N 0.452
gw1.199.74.1 Physcomitrella patens gw1.199.74.1 I 0.449
Aquca_002_00505 Aquilegia coerulea Aquca_002_00505 I 0.448
AGOS_ADL310W Ashbya gossypii AGOS_ADL310W I 0.444
AACERI_AaceriADL310W Saccharomycetaceae sp ashbya aceri AACERI_AaceriADL310W I 0.444
YALI0_C11671g Yarrowia lipolytica YALI0_C11671g I 0.444
Ecym_7459 Eremothecium cymbalariae Ecym_7459 I 0.444
ANIA_02885 Aspergillus nidulans CADANIAG00010204 I 0.441
Bo7g091510 Brassica oleracea Bo7g091510 N 0.440
Bra025350 Brassica rapa Bra025350 N 0.440
EFV62220 Trichinella spiralis EFV62220 N 0.439
NCU02819 Neurospora crassa NCU02819 D 0.438
estExt_fgenesh3_kg.C_40082 Neurospora discreta estExt_fgenesh3_kg.C_40082 I 0.438
CPUR_04901 Claviceps purpurea CPUR_04901 I 0.438
SMAC_00615 Sordaria macrospora SMAC_00615 I 0.438
NEUTE1DRAFT_106544 Neurospora tetrasperma NEUTE1DRAFT_106544 I 0.438
GNLVRS01_PISO0N04523g Millerozyma farinosa GNLVRS01_PISO0N04523g I 0.437
CORT_0E02670 Candida orthopsilosis CORT_0E02670 I 0.437
CPAG_02417 Candida parapsilosis CPAG_02417 I 0.437
Kpol_376p1 Vanderwaltozyma polyspora Kpol_376p1 I 0.437
hmgb2a Danio rerio ENSDARG00000029722 N 0.436
ENSMMUG00000031258 Macaca mulatta ENSMMUG00000031258 I 0.435
NCLIV_043670 Neospora caninum NCLIV_043670 I 0.434
Z518_04911 Rhinocladiella mackenziei Z518_04911 I 0.434
PV11_09703 Exophiala sideris PV11_09703 I 0.434
PV05_09944 Exophiala xenobiotica PV05_09944 I 0.434
A1O1_01197 Capronia coronata A1O1_01197 I 0.434
A1O7_01726 Cladophialophora yegresii A1O7_01726 I 0.434
A1O3_08778 Capronia epimyces A1O3_08778 I 0.434
PV06_04154 Exophiala oligosperma PV06_04154 I 0.434
HMPREF1120_00213 Exophiala dermatitidis HMPREF1120_00213 I 0.434
TGME49_010410 Toxoplasma gondii TGME49_010410 I 0.434
G647_10093 Cladophialophora carrionii G647_10093 I 0.434
POPTR_0004s12290 Populus trichocarpa POPTR_0004s12290 I 0.432
estExt_fgenesh1_pm.C_130068 Coccomyxa subellipsoidea C169 estExt_fgenesh1_pm.C_130068 I 0.431
DEHA2D17710g Debaryomyces hansenii DEHA2D17710g I 0.431
GNLVRS01_PISO0M04390g Millerozyma farinosa GNLVRS01_PISO0M04390g I 0.431
CD36_41610 Candida dubliniensis CD36_41610 I 0.431
PICST_23779 Scheffersomyces stipitis PICST_23779 I 0.431
gww1.1.1.1342.1 Pichia stipitis gww1.1.1.1342.1 I 0.431
estExt_Genewise1.C_130158 Chlorella vulgaris estExt_Genewise1.C_130158 I 0.431
SPAPADRAFT_62621 Spathaspora passalidarum SPAPADRAFT_62621 I 0.431
SJAG_03603 Schizosaccharomyces japonicus SJAG_03603 I 0.430
HMPREF1541_06859 Cyphellophora europaea HMPREF1541_06859 I 0.429
PV08_04655 Exophiala spinifera PV08_04655 I 0.428
ENSXMAG00000000362 Xiphophorus maculatus ENSXMAG00000000362 I 0.428
Ocbimv22012197m.g Octopus bimaculoides Ocbimv22012197m.g I 0.428
L804_02852 Cryptococcus gattii L804_02852 I 0.427
CNF04730 Cryptococcus neoformans CNF04730 I 0.427
Bcin01g08840 Botrytis cinerea Bcin01g08840 I 0.427
ENSCJAG00000005187 Callithrix jacchus ENSCJAG00000005187 I 0.426
EV44_g2383 Erysiphe necator EV44_g2383 I 0.426
CTHT_0053790 Chaetomium thermophilum CTHT_0053790 I 0.425
ACEP19638 Atta cephalotes ACEP19638 I 0.424
nhp6 Schizosaccharomyces pombe SPAC57A10.09c I 0.423
PODANS_1_7390 Podospora anserina PODANS_1_7390 I 0.423
RO3G_07751 Rhizopus oryzae RO3G_07751 I 0.422
Scas_Contig667.17 Saccharomyces castellii Scas_Contig667.17 I 0.422
M407DRAFT_81488 Tulasnella calospora M407DRAFT_81488 I 0.422
e_gw1.1.2450.1 Mucor circinelloides e_gw1.1.2450.1 I 0.422
fgenesh2_pg.scaffold_1690000001 Branchiostoma floridae fgenesh2_pg.scaffold_1690000001 N 0.422
NCAS_0A11010 Naumovozyma castellii NCAS_0A11010 I 0.422
MYCTH_2294934 Myceliophthora thermophila MYCTH_2294934 I 0.420
PLICRDRAFT_46399 Plicaturopsis crispa PLICRDRAFT_46399 I 0.420
TCM_014800 Theobroma cacao TCM_014800 N 0.420
mgf006762m Mimulus guttatus mgf006762m N 0.420
Moror_35 Moniliophthora roreri Moror_35 I 0.418
BGHDH14_bgh04339 Blumeria graminis BGHDH14_bgh04339 I 0.416
TPHA_0M01480 Tetrapisispora phaffii TPHA_0M01480 I 0.416
estExt_fgeneshPB_pg.C_360007 Phycomyces blakesleeanus estExt_fgeneshPB_pg.C_360007 I 0.415