fgenesh2_pg.scaffold_1690000001 (Branchiostoma floridae)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 fgenesh2_pg.scaffold_1690000001 T334144_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_pg.scaffold_1690000001 Sox 1305 1372

Links

Other Sox family TFs
Other Branchiostoma floridae TFs

90 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
LOAG_15875 Loa loa LOAG_15875 N 0.526
GPUH_0001659301 Gongylonema pulchrum GPUH_0001659301 N 0.526
ASIM_0001613301 Anisakis simplex ASIM_0001613301 N 0.516
CBN15844 Caenorhabditis brenneri CBN15844 N 0.508
BGLB013626 Biomphalaria glabrata BGLB013626 N 0.488
SVUK_0000686401 Strongylus vulgaris SVUK_0000686401 N 0.483
WUBG_00348 Wuchereria bancrofti WUBG_00348 N 0.479
Bm2393 Brugia malayi Bm2393 N 0.479
WBGene00238178 Onchocerca volvulus WBGene00238178 N 0.479
nDi.2.2.2.g06671 Dirofilaria immitis nDi.2.2.2.g06671 N 0.479
nDi.2.2.2.g10298 Dirofilaria immitis nDi.2.2.2.g10298 N 0.479
nLs.2.1.2.g08566 Litomosoides sigmodontis nLs.2.1.2.g08566 N 0.479
nOo.2.0.1.g07918 Onchocerca ochengi nOo.2.0.1.g07918 N 0.479
SMUV_0000135001 Syphacia muris SMUV_0000135001 N 0.479
TCLT_0000189901 Thelazia callipaeda TCLT_0000189901 N 0.479
Sakowv30031460m.g Saccoglossus kowalevskii Sakowv30031460m.g N 0.478
CRE28315 Caenorhabditis remanei CRE28315 N 0.475
ASU_00939 Ascaris suum ASU_00939 N 0.472
SMAR009325 Strigamia maritima SMAR009325 N 0.469
SNAPOd2T00002710001 Oikopleura dioica SNAPOd2T00002710001 I 0.467
D918_05288 Trichuris suis D918_05288 N 0.465
TMUE_s0089001400 Trichuris muris TMUE_s0089001400 N 0.465
EFV56090 Trichinella spiralis EFV56090 N 0.463
EFV56095 Trichinella spiralis EFV56095 N 0.463
D917_05046 Trichinella nativa D917_05046 N 0.463
D917_05048 Trichinella nativa D917_05048 N 0.463
D918_06015 Trichuris suis D918_06015 N 0.463
tetur31g00660 Tetranychus urticae tetur31g00660 N 0.461
tetur31g00840 Tetranychus urticae tetur31g00840 N 0.461
tetur31g01070 Tetranychus urticae tetur31g01070 N 0.461
NEMVEDRAFT_v1g127783 Nematostella vectensis NEMVEDRAFT_v1g127783 N 0.458
CJA17191 Caenorhabditis japonica CJA17191 N 0.456
TMUE_s0227000300 Trichuris muris TMUE_s0227000300 N 0.456
BTMF_0001478401 Brugia timori BTMF_0001478401 N 0.455
CGI_10018256 Crassostrea gigas CGI_10018256 N 0.450
LotgiG144192 Lottia gigantea LotgiG144192 N 0.450
ISCW005293 Ixodes scapularis ISCW005293 N 0.448
ENSPFOG00000017300 Poecilia formosa ENSPFOG00000017300 N 0.446
ENSXMAG00000016160 Xiphophorus maculatus ENSXMAG00000016160 N 0.446
NECAME_06830 Necator americanus NECAME_06830 N 0.445
TELCIR_19210 Teladorsagia circumcincta TELCIR_19210 N 0.445
ENSAMXG00000016832 Astyanax mexicanus ENSAMXG00000016832 N 0.444
SSTP_0000878000 Strongyloides stercoralis SSTP_0000878000 N 0.444
CBG18873 Caenorhabditis briggsae CBG18873 N 0.442
Hba_16915 Heterorhabditis bacteriophora Hba_16915 I 0.439
TELCIR_25179 Teladorsagia circumcincta TELCIR_25179 N 0.439
pbrm1l Danio rerio ENSDARG00000077038 N 0.438
SPU_025140 Strongylocentrotus purpuratus SPU_025140 N 0.437
PTRK_0001310900 Parastrongyloides trichosuri PTRK_0001310900 N 0.437
SPAL_0001274100 Strongyloides papillosus SPAL_0001274100 N 0.437
SVE_0827400 Strongyloides venezuelensis SVE_0827400 N 0.437
ASIM_0000224701 Anisakis simplex ASIM_0000224701 N 0.436
hmg-6 Caenorhabditis elegans WBGene00009827 N 0.435
Minc06622 Meloidogyne incognita Minc06622 N 0.433
DICVIV_02621 Dictyocaulus viviparus DICVIV_02621 N 0.433
MhA1_Contig232.frz3.gene23 Meloidogyne hapla MhA1_Contig232.frz3.gene23 N 0.433
BTMF_0001006201 Brugia timori BTMF_0001006201 I 0.431
L596_g21045 Steinernema carpocapsae L596_g21045 I 0.430
L892_g13433 Steinernema scapterisci L892_g13433 I 0.430
MhA1_Contig1224.frz3.gene1 Meloidogyne hapla MhA1_Contig1224.frz3.gene1 N 0.429
SSTP_0001127200 Strongyloides stercoralis SSTP_0001127200 N 0.429
ENSPFOG00000002336 Poecilia formosa ENSPFOG00000002336 N 0.427
PEQ_0000291001 Parascaris equorum PEQ_0000291001 I 0.427
HPODL_03671 Ogataea parapolymorpha HPODL_03671 I 0.426
AFUN005717 Anopheles funestus AFUN005717 N 0.425
BXY_0575000 Bursaphelenchus xylophilus BXY_0575000 N 0.425
WUBG_03167 Wuchereria bancrofti WUBG_03167 N 0.424
Bm7765 Brugia malayi Bm7765 N 0.424
Bm9369 Brugia malayi Bm9369 N 0.424
LOAG_11340 Loa loa LOAG_11340 N 0.424
MYCTH_2294934 Myceliophthora thermophila MYCTH_2294934 I 0.424
WBGene00239172 Onchocerca volvulus WBGene00239172 N 0.424
BTMF_0001523401 Brugia timori BTMF_0001523401 N 0.424
EEL_0000724001 Elaeophora elaphi EEL_0000724001 N 0.424
L898_g14011 Steinernema monticolum L898_g14011 N 0.424
nAv.1.0.1.g05839 Acanthocheilonema viteae nAv.1.0.1.g05839 N 0.424
nLs.2.1.2.g07200 Litomosoides sigmodontis nLs.2.1.2.g07200 N 0.424
nOo.2.0.1.g03638 Onchocerca ochengi nOo.2.0.1.g03638 N 0.424
OFLC_0000194401 Onchocerca flexuosa OFLC_0000194401 N 0.424
GLYMA01G33240 Glycine max GLYMA01G33240 I 0.422
LotgiG176647 Lottia gigantea LotgiG176647 N 0.422
ENSCSAVG00000009270 Ciona savignyi ENSCSAVG00000009270 N 0.420
ACEP19638 Atta cephalotes ACEP19638 I 0.418
CBG11867 Caenorhabditis briggsae CBG11867 N 0.417
CBN07735 Caenorhabditis brenneri CBN07735 N 0.417
CBN31697 Caenorhabditis brenneri CBN31697 N 0.417
CRE14258 Caenorhabditis remanei CRE14258 N 0.417
pbrm-1 Caenorhabditis elegans WBGene00007042 N 0.417
L889_g13125 Steinernema feltiae L889_g13125 N 0.417
DME_0000632401 Dracunculus medinensis DME_0000632401 N 0.416