hmg-6 (Caenorhabditis elegans)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 WBGene00009827 T333277_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Predicted to enable DNA binding activity. Predicted to be located in nucleus. Is expressed in amphid neurons; head neurons; phasmid neurons; sperm; and tail neurons. Orthologous to human TOX4 (TOX high mobility group box family member 4). [provided by Alliance of Genome Resources, Apr 2022]

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
F47G4.6 Sox 49 117

Links

Other Sox family TFs
Other Caenorhabditis elegans TFs

21 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CBG18873 Caenorhabditis briggsae CBG18873 N 0.658
CJA17191 Caenorhabditis japonica CJA17191 N 0.573
CBN15844 Caenorhabditis brenneri CBN15844 N 0.563
CRE28315 Caenorhabditis remanei CRE28315 N 0.509
NECAME_06830 Necator americanus NECAME_06830 N 0.498
SNAPOd2T00002710001 Oikopleura dioica SNAPOd2T00002710001 I 0.478
DICVIV_02621 Dictyocaulus viviparus DICVIV_02621 N 0.477
SVUK_0000686401 Strongylus vulgaris SVUK_0000686401 N 0.461
SMAR009325 Strigamia maritima SMAR009325 N 0.443
TELCIR_25179 Teladorsagia circumcincta TELCIR_25179 N 0.442
TELCIR_19210 Teladorsagia circumcincta TELCIR_19210 N 0.442
BTMF_0001478401 Brugia timori BTMF_0001478401 N 0.435
fgenesh2_pg.scaffold_1690000001 Branchiostoma floridae fgenesh2_pg.scaffold_1690000001 N 0.435
tox2 Takifugu rubripes ENSTRUG00000013848 N 0.427
PEQ_0000291001 Parascaris equorum PEQ_0000291001 I 0.425
BXY_0575000 Bursaphelenchus xylophilus BXY_0575000 N 0.425
Sakowv30031460m.g Saccoglossus kowalevskii Sakowv30031460m.g N 0.422
ASU_00939 Ascaris suum ASU_00939 N 0.421
SPU_025140 Strongylocentrotus purpuratus SPU_025140 N 0.420
Hba_16915 Heterorhabditis bacteriophora Hba_16915 I 0.419
S40288_09735 Stachybotrys chartarum S40288_09735 I 0.416