CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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MDP0000165147
(
Malus domestica
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00505 (HMG_box)
IPR000910
MDP0000165147
T334593_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
MDP0000165147
Sox
17
82
PRRAMFGFMFFSNMERDNVKRENHGIAFTDVGRVLGEKWKKMSAEEKEPYEAKARQDKNATRMKLV
Links
Other
Sox
family TFs
Other
Malus domestica
TFs
40 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
MDP0000828844
Malus domestica
MDP0000828844
I
0.524
MDP0000310093
Malus domestica
MDP0000310093
I
0.522
TCM_018380
Theobroma cacao
TCM_018380
I
0.515
PRUPE_ppa002690mg
Prunus persica
PRUPE_ppa002690mg
I
0.514
Pm015842
Prunus mume
Pm015842
I
0.514
gene01265-v1.0-hybrid
Fragaria vesca
gene01265-v1.0-hybrid
I
0.514
GLYMA13G05140
Glycine max
GLYMA13G05140
I
0.486
gene01264-v1.0-hybrid
Fragaria vesca
gene01264-v1.0-hybrid
I
0.480
PK18077.1
Cannabis sativa
PK18077.1
I
0.477
Ca_10804
Cicer arietinum
Ca_10804
I
0.472
chr2.CM0225.40.nc
Lotus japonicus
chr2.CM0225.40.nc
I
0.469
LjSGA_094514.1
Lotus japonicus
LjSGA_094514.1
I
0.469
Ciclev10011266m.g
Citrus clementina
Ciclev10011266m.g
I
0.465
orange1.1g006512m.g
Citrus sinensis
orange1.1g006512m.g
I
0.465
MDP0000301546
Malus domestica
MDP0000301546
I
0.464
SSRP1
Arabidopsis thaliana
AT3G28730
I
0.462
MTR_1g022345
Medicago truncatula
MTR_1g022345
I
0.462
Ca_12487
Cicer arietinum
Ca_12487
I
0.462
Cagra.0535s0005
Capsella grandiflora
Cagra.0535s0005
I
0.462
Carubv10016819m.g
Capsella rubella
Carubv10016819m.g
I
0.462
SJAG_03603
Schizosaccharomyces japonicus
SJAG_03603
I
0.461
Thhalv10003803m.g
Eutrema salsugineum
Thhalv10003803m.g
I
0.457
PDK_20s1437671g003
Phoenix dactylifera
PDK_20s1437671g003
I
0.452
Cla017295
Citrullus lanatus
Cla017295
I
0.448
Cucsa.339070
Cucumis sativus
Cucsa.339070
I
0.448
evm.TU.supercontig_211.6
Carica papaya
evm.TU.supercontig_211.6
I
0.448
Bostr.0556s0524
Boechera stricta
Bostr.0556s0524
I
0.443
29822.m003476
Ricinus communis
29822.m003476
I
0.442
cassava42041.valid.m1
Manihot esculenta
cassava42041.valid.m1
I
0.442
ATHMG
Arabidopsis lyrata
scaffold_500854.1
I
0.432
ATHMG
Vitis vinifera
VIT_14s0108g00040
I
0.428
PGSC0003DMG400001414
Solanum tuberosum
PGSC0003DMG400001414
I
0.427
PGSC0003DMG400018099
Solanum tuberosum
PGSC0003DMG400018099
I
0.427
Solyc02g087710.2
Solanum lycopersicum
Solyc02g087710.2
I
0.427
CHLREDRAFT_189879
Chlamydomonas reinhardtii
CHLREDRAFT_189879
N
0.426
AMTR_s00078p00107740
Amborella trichopoda
AMTR_s00078p00107740
I
0.421
GSMUA_Achr2G19630_001
Musa acuminata
GSMUA_Achr2G19630_001
I
0.421
mgf012563m
Mimulus guttatus
mgf012563m
I
0.418
mgf001267m
Mimulus guttatus
mgf001267m
I
0.417
estExt_fgeneshPB_pg.C_360007
Phycomyces blakesleeanus
estExt_fgeneshPB_pg.C_360007
I
0.415