OB09G25530 (Oryza brachyantha)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 OB09G25530 T331561_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMG-1
M02720_2.00 		Pisum sativum
STYGTDHTY
RADHACRAS		 SELEX
Mathelier et al.(2014)
MA0044.1 		0.600 0.652
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OB09G25530.1 Sox 28 97

Links

Other Sox family TFs
Other Oryza brachyantha TFs

280 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
LPERR09G14820 Leersia perrieri LPERR09G14820 I 0.741
OMERI09G14100 Oryza meridionalis OMERI09G14100 I 0.735
ONIVA09G20030 Oryza nivara ONIVA09G20030 I 0.735
ORGLA09G0150800 Oryza glaberrima ORGLA09G0150800 I 0.735
ORUFI09G20440 Oryza rufipogon ORUFI09G20440 I 0.735
OS09G0551600 Oryza sativa OS09G0551600 I 0.735
GRMZM2G066528 Zea mays GRMZM2G066528 I 0.712
TRIUR3_27273 Triticum urartu TRIUR3_27273 I 0.712
Sb02g032140 Sorghum bicolor Sb02g032140 I 0.703
Si031512m.g Setaria italica Si031512m.g I 0.703
Pavir.Ba01379 Panicum virgatum Pavir.Ba01379 I 0.703
Pavir.Bb02550 Panicum virgatum Pavir.Bb02550 I 0.703
Traes_5DL_DD9491112 Triticum aestivum Traes_5DL_DD9491112 I 0.694
PGSC0003DMG400001567 Solanum tuberosum PGSC0003DMG400001567 I 0.672
Solyc02g082700.2 Solanum lycopersicum Solyc02g082700.2 I 0.672
Traes_5BL_9CC98DD38 Triticum aestivum Traes_5BL_9CC98DD38 I 0.666
PGSC0003DMG400018685 Solanum tuberosum PGSC0003DMG400018685 I 0.665
GRMZM2G162284 Zea mays GRMZM2G162284 I 0.663
gene13043-v1.0-hybrid Fragaria vesca gene13043-v1.0-hybrid I 0.662
BRADI4G37247 Brachypodium distachyon BRADI4G37247 I 0.657
VIT_04s0044g00110 Vitis vinifera VIT_04s0044g00110 I 0.655
VIT_18s0122g01190 Vitis vinifera VIT_18s0122g01190 I 0.655
Aquca_015_00344 Aquilegia coerulea Aquca_015_00344 I 0.655
cassava24859.valid.m1 Manihot esculenta cassava24859.valid.m1 I 0.649
Eucgr.F03571 Eucalyptus grandis Eucgr.F03571 I 0.645
PRUPE_ppa011596mg Prunus persica PRUPE_ppa011596mg I 0.644
Pm026798 Prunus mume Pm026798 I 0.644
TCM_000068 Theobroma cacao TCM_000068 I 0.643
Aquca_045_00054 Aquilegia coerulea Aquca_045_00054 I 0.643
PDK_20s1306741g001 Phoenix dactylifera PDK_20s1306741g001 I 0.643
POPTR_0005s10440 Populus trichocarpa POPTR_0005s10440 I 0.640
Cla009093 Citrullus lanatus Cla009093 I 0.640
Cucsa.323100 Cucumis sativus Cucsa.323100 I 0.640
SapurV1A.0085s0030 Salix purpurea SapurV1A.0085s0030 I 0.640
mgf009330m Mimulus guttatus mgf009330m I 0.638
PRUPE_ppa012424mg Prunus persica PRUPE_ppa012424mg I 0.637
Pm018913 Prunus mume Pm018913 I 0.637
MDP0000275042 Malus domestica MDP0000275042 I 0.637
MDP0000362980 Malus domestica MDP0000362980 I 0.637
MDP0000757111 Malus domestica MDP0000757111 I 0.637
30170.m014386 Ricinus communis 30170.m014386 I 0.636
cassava18624.valid.m1 Manihot esculenta cassava18624.valid.m1 I 0.636
cassava18625.valid.m1 Manihot esculenta cassava18625.valid.m1 I 0.636
cassava18626.valid.m1 Manihot esculenta cassava18626.valid.m1 I 0.636
cassava35948.valid.m1 Manihot esculenta cassava35948.valid.m1 I 0.636
PRUPE_ppa012972mg Prunus persica PRUPE_ppa012972mg I 0.634
TCM_034406 Theobroma cacao TCM_034406 I 0.634
Ciclev10002782m.g Citrus clementina Ciclev10002782m.g I 0.634
Gorai.002G115100 Gossypium raimondii Gorai.002G115100 I 0.634
Gorai.005G114500 Gossypium raimondii Gorai.005G114500 I 0.634
orange1.1g031906m.g Citrus sinensis orange1.1g031906m.g I 0.634
POPTR_0002s01000 Populus trichocarpa POPTR_0002s01000 I 0.629
XM_002306945.1 Populus trichocarpa POPTR_0005s27390 I 0.629
SapurV1A.0016s0600 Salix purpurea SapurV1A.0016s0600 I 0.629
SapurV1A.0266s0310 Salix purpurea SapurV1A.0266s0310 I 0.629
AMTR_s00044p00160130 Amborella trichopoda AMTR_s00044p00160130 I 0.627
HMGB3 Arabidopsis thaliana AT1G20696 I 0.627
Bo7g061420 Brassica oleracea Bo7g061420 I 0.627
Bo8g070350 Brassica oleracea Bo8g070350 I 0.627
Bra025838 Brassica rapa Bra025838 I 0.627
HMGB3 Arabidopsis lyrata fgenesh2_kg.1__2258__AT1G20696.3 I 0.627
Bostr.7128s0662 Boechera stricta Bostr.7128s0662 I 0.627
Cagra.6160s0027 Capsella grandiflora Cagra.6160s0027 I 0.627
Carubv10012681m.g Capsella rubella Carubv10012681m.g I 0.627
Thhalv10009371m.g Eutrema salsugineum Thhalv10009371m.g I 0.627
MDP0000607529 Malus domestica MDP0000607529 I 0.623
mgf016363m Mimulus guttatus mgf016363m I 0.621
GLYMA09G33070 Glycine max GLYMA09G33070 I 0.620
GLYMA16G22060 Glycine max GLYMA16G22060 I 0.620
mgf006113m Mimulus guttatus mgf006113m I 0.620
mgf008076m Mimulus guttatus mgf008076m I 0.620
mgf016608m Mimulus guttatus mgf016608m I 0.620
Lus10012252.g Linum usitatissimum Lus10012252.g I 0.619
Lus10016025.g Linum usitatissimum Lus10016025.g I 0.619
AMTR_s00029p00240750 Amborella trichopoda AMTR_s00029p00240750 I 0.616
GSMUA_Achr2G03630_001 Musa acuminata GSMUA_Achr2G03630_001 I 0.616
GSMUA_Achr9G21200_001 Musa acuminata GSMUA_Achr9G21200_001 I 0.616
POPTR_0010s19720 Populus trichocarpa POPTR_0010s19720 I 0.616
VIT_13s0067g00640 Vitis vinifera VIT_13s0067g00640 I 0.616
29669.m000844 Ricinus communis 29669.m000844 I 0.616
HMGB1 Arabidopsis thaliana AT3G51880 I 0.615
Bo7g101270 Brassica oleracea Bo7g101270 I 0.615
HMGB1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5001281 I 0.615
Ca_09896 Cicer arietinum Ca_09896 I 0.615
Bostr.6864s0060 Boechera stricta Bostr.6864s0060 I 0.615
Cagra.1043s0022 Capsella grandiflora Cagra.1043s0022 I 0.615
Thhalv10010751m.g Eutrema salsugineum Thhalv10010751m.g I 0.615
GLYMA04G01840 Glycine max GLYMA04G01840 I 0.614
GLYMA06G01970 Glycine max GLYMA06G01970 I 0.614
mgf014518m Mimulus guttatus mgf014518m I 0.613
Eucgr.J02535 Eucalyptus grandis Eucgr.J02535 I 0.611
Ciclev10032930m.g Citrus clementina Ciclev10032930m.g I 0.609
orange1.1g029982m.g Citrus sinensis orange1.1g029982m.g I 0.609
GSMUA_Achr11G07320_001 Musa acuminata GSMUA_Achr11G07320_001 I 0.607
GSMUA_AchrUn_randomG22010_001 Musa acuminata GSMUA_AchrUn_randomG22010_001 I 0.607
MTR_3g115580 Medicago truncatula MTR_3g115580 I 0.607
MTR_8g073345 Medicago truncatula MTR_8g073345 I 0.606
SapurV1A.0825s0160 Salix purpurea SapurV1A.0825s0160 I 0.604
Bo8g081200 Brassica oleracea Bo8g081200 I 0.603
TCM_042534 Theobroma cacao TCM_042534 I 0.603
Carubv10018109m.g Capsella rubella Carubv10018109m.g I 0.603
LjT35D08.150.nd Lotus japonicus LjT35D08.150.nd I 0.603
Ciclev10026715m.g Citrus clementina Ciclev10026715m.g I 0.602
HMGB2 Arabidopsis thaliana AT1G20693 I 0.601
HMGB2 Arabidopsis lyrata fgenesh2_kg.1__2255__AT1G20693.2 I 0.601
Bostr.7128s0663 Boechera stricta Bostr.7128s0663 I 0.601
Cagra.6160s0028 Capsella grandiflora Cagra.6160s0028 I 0.601
Carubv10010586m.g Capsella rubella Carubv10010586m.g I 0.601
evm.TU.supercontig_365.4 Carica papaya evm.TU.supercontig_365.4 I 0.601
Gorai.009G186800 Gossypium raimondii Gorai.009G186800 I 0.601
Bo5g030580 Brassica oleracea Bo5g030580 I 0.600
PGSC0003DMG400008501 Solanum tuberosum PGSC0003DMG400008501 I 0.600
HMGB1 Vitis vinifera VIT_08s0007g02200 I 0.600
HMG-1 Pisum sativum Q41026_PEA D 0.600
Eucgr.A00506 Eucalyptus grandis Eucgr.A00506 I 0.600
evm.TU.supercontig_26.174 Carica papaya evm.TU.supercontig_26.174 I 0.599
BRADI1G29730 Brachypodium distachyon BRADI1G29730 I 0.598
GRMZM5G834758 Zea mays GRMZM5G834758 I 0.598
OB06G35870 Oryza brachyantha OB06G35870 I 0.598
Sb10g030910 Sorghum bicolor Sb10g030910 I 0.598
Lus10028298.g Linum usitatissimum Lus10028298.g I 0.597
Thhalv10009970m.g Eutrema salsugineum Thhalv10009970m.g I 0.596
Gorai.002G263800 Gossypium raimondii Gorai.002G263800 I 0.594
Lus10040192.g Linum usitatissimum Lus10040192.g I 0.594
MTR_7g068280 Medicago truncatula MTR_7g068280 I 0.593
Ca_19340 Cicer arietinum Ca_19340 I 0.593
F775_27510 Aegilops tauschii F775_27510 I 0.592
MLOC_78556 Hordeum vulgare MLOC_78556 I 0.592
TRIUR3_13577 Triticum urartu TRIUR3_13577 I 0.592
Bo7g014280 Brassica oleracea Bo7g014280 I 0.591
LPERR06G23570 Leersia perrieri LPERR06G23570 I 0.591
OBART06G28090 Oryza barthii OBART06G28090 I 0.591
OGLUM06G29480 Oryza glumaepatula OGLUM06G29480 I 0.591
OLONG_007465 Oryza longistaminata OLONG_007465 I 0.591
OMERI06G28030 Oryza meridionalis OMERI06G28030 I 0.591
ONIVA06G31070 Oryza nivara ONIVA06G31070 I 0.591
OPUNC06G25640 Oryza punctata OPUNC06G25640 I 0.591
ORGLA06G0238300 Oryza glaberrima ORGLA06G0238300 I 0.591
ORUFI06G30030 Oryza rufipogon ORUFI06G30030 I 0.591
OS06G0728000 Oryza sativa OS06G0728000 I 0.591
Si007288m.g Setaria italica Si007288m.g I 0.591
Aquca_004_00335 Aquilegia coerulea Aquca_004_00335 I 0.591
Pavir.Db00040 Panicum virgatum Pavir.Db00040 I 0.591
Pavir.J04920 Panicum virgatum Pavir.J04920 I 0.591
PRUPE_ppa007518mg Prunus persica PRUPE_ppa007518mg I 0.590
Pm002934 Prunus mume Pm002934 I 0.590
orange1.1g031973m.g Citrus sinensis orange1.1g031973m.g I 0.590
GSMUA_Achr10G07270_001 Musa acuminata GSMUA_Achr10G07270_001 I 0.589
evm.TU.supercontig_11.167 Carica papaya evm.TU.supercontig_11.167 I 0.587
Gorai.006G181900 Gossypium raimondii Gorai.006G181900 I 0.586
MTR_5g024180 Medicago truncatula MTR_5g024180 I 0.584
SapurV1A.0061s0170 Salix purpurea SapurV1A.0061s0170 I 0.584
SapurV1A.2780s0020 Salix purpurea SapurV1A.2780s0020 I 0.584
Bra002073 Brassica rapa Bra002073 I 0.583
Gorai.001G198900 Gossypium raimondii Gorai.001G198900 I 0.579
Cucsa.067200 Cucumis sativus Cucsa.067200 I 0.577
GLYMA01G28820 Glycine max GLYMA01G28820 I 0.576
GLYMA03G08270 Glycine max GLYMA03G08270 I 0.576
POPTR_0008s06730 Populus trichocarpa POPTR_0008s06730 I 0.576
Cla018386 Citrullus lanatus Cla018386 I 0.576
Cla023817 Citrullus lanatus Cla023817 I 0.575
Cucsa.272190 Cucumis sativus Cucsa.272190 I 0.575
Ciclev10012868m.g Citrus clementina Ciclev10012868m.g I 0.575
gene20487-v1.0-hybrid Fragaria vesca gene20487-v1.0-hybrid I 0.575
gene20961-v1.0-hybrid Fragaria vesca gene20961-v1.0-hybrid I 0.575
orange1.1g030283m.g Citrus sinensis orange1.1g030283m.g I 0.575
PK29786.1 Cannabis sativa PK29786.1 I 0.575
Ca_10725 Cicer arietinum Ca_10725 I 0.572
mgf000913m Mimulus guttatus mgf000913m I 0.571
TCM_021706 Theobroma cacao TCM_021706 I 0.567
Bra037266 Brassica rapa Bra037266 I 0.566
Thhalv10022905m.g Eutrema salsugineum Thhalv10022905m.g I 0.566
PK11149.1 Cannabis sativa PK11149.1 I 0.566
HMGB4 Arabidopsis thaliana AT2G17560 I 0.565
Bo1g006360 Brassica oleracea Bo1g006360 I 0.565
Bo7g117500 Brassica oleracea Bo7g117500 I 0.565
Bra011624 Brassica rapa Bra011624 I 0.565
Bra017723 Brassica rapa Bra017723 I 0.565
HMGB4 Arabidopsis lyrata fgenesh2_kg.3__3350__AT2G17560.1 I 0.565
Bostr.18351s0219 Boechera stricta Bostr.18351s0219 I 0.565
Cagra.1891s0017 Capsella grandiflora Cagra.1891s0017 I 0.565
Carubv10014808m.g Capsella rubella Carubv10014808m.g I 0.565
evm.TU.supercontig_19.183 Carica papaya evm.TU.supercontig_19.183 I 0.563
cassava23716.valid.m1 Manihot esculenta cassava23716.valid.m1 I 0.562
GSMUA_Achr4G25860_001 Musa acuminata GSMUA_Achr4G25860_001 I 0.561
29701.m000600 Ricinus communis 29701.m000600 I 0.556
chr1.CM0113.560.nc Lotus japonicus chr1.CM0113.560.nc I 0.554
Thhalv10026524m.g Eutrema salsugineum Thhalv10026524m.g I 0.553
cassava42371.valid.m1 Manihot esculenta cassava42371.valid.m1 I 0.549
cassava42372.valid.m1 Manihot esculenta cassava42372.valid.m1 I 0.549
cassava42373.valid.m1 Manihot esculenta cassava42373.valid.m1 I 0.549
cassava44923.m1 Manihot esculenta cassava44923.m1 I 0.549
Gorai.013G018500 Gossypium raimondii Gorai.013G018500 I 0.546
GSMUA_Achr2G11060_001 Musa acuminata GSMUA_Achr2G11060_001 I 0.545
Ca_04825 Cicer arietinum Ca_04825 I 0.541
29600.m000548 Ricinus communis 29600.m000548 I 0.541
MTR_1g115220 Medicago truncatula MTR_1g115220 I 0.540
chr5.CM0180.220.nd Lotus japonicus chr5.CM0180.220.nd I 0.540
Aquca_007_00897 Aquilegia coerulea Aquca_007_00897 I 0.535
MTR_7g082820 Medicago truncatula MTR_7g082820 I 0.528
Ca_05351 Cicer arietinum Ca_05351 I 0.528
gw1.106.59.1 Physcomitrella patens gw1.106.59.1 I 0.524
gw1.106.60.1 Physcomitrella patens gw1.106.60.1 I 0.524
SELMODRAFT_175895 Selaginella moellendorffii SELMODRAFT_175895 I 0.519
SELMODRAFT_38818 Selaginella moellendorffii SELMODRAFT_38818 I 0.519
Traes_5AL_D1358AF6E Triticum aestivum Traes_5AL_D1358AF6E I 0.517
Lus10035511.g Linum usitatissimum Lus10035511.g I 0.515
PK14705.1 Cannabis sativa PK14705.1 I 0.515
estExt_fgenesh1_pm.C_880025 Physcomitrella patens estExt_fgenesh1_pm.C_880025 I 0.514
BGIOSGA023639 Oryza indica BGIOSGA023639 I 0.509
SELMODRAFT_18312 Selaginella moellendorffii SELMODRAFT_18312 I 0.509
SELMODRAFT_18313 Selaginella moellendorffii SELMODRAFT_18313 I 0.509
GLYMA20G23370 Glycine max GLYMA20G23370 I 0.507
cassava17389.m1 Manihot esculenta cassava17389.m1 I 0.491
PDK_20s1434871g001 Phoenix dactylifera PDK_20s1434871g001 I 0.488
SELMODRAFT_117986 Selaginella moellendorffii SELMODRAFT_117986 I 0.487
SELMODRAFT_75453 Selaginella moellendorffii SELMODRAFT_75453 I 0.487
Cagra.2350s0098 Capsella grandiflora Cagra.2350s0098 I 0.482
Carubv10005973m.g Capsella rubella Carubv10005973m.g I 0.482
GLYMA10G43440 Glycine max GLYMA10G43440 I 0.477
HMGB5 Arabidopsis lyrata Al_scaffold_0007_498 I 0.475
Bostr.7867s1415 Boechera stricta Bostr.7867s1415 I 0.475
orange1.1g044275m.g Citrus sinensis orange1.1g044275m.g I 0.474
gene18862-v1.0-hybrid Fragaria vesca gene18862-v1.0-hybrid I 0.472
HMGB6 Vitis vinifera VIT_10s0071g00870 I 0.458
GSMUA_Achr5G11630_001 Musa acuminata GSMUA_Achr5G11630_001 I 0.451
HMGB5 Arabidopsis thaliana AT4G35570 I 0.444
PK27241.1 Cannabis sativa PK27241.1 I 0.444
AMTR_s00109p00094550 Amborella trichopoda AMTR_s00109p00094550 I 0.436
BGIOSGA008782 Oryza indica BGIOSGA008782 N 0.432
BRADI3G51140 Brachypodium distachyon BRADI3G51140 N 0.432
OB02G34710 Oryza brachyantha OB02G34710 N 0.432
OBART02G27340 Oryza barthii OBART02G27340 N 0.432
OGLUM02G27900 Oryza glumaepatula OGLUM02G27900 N 0.432
OMERI02G26620 Oryza meridionalis OMERI02G26620 N 0.432
ONIVA02G29880 Oryza nivara ONIVA02G29880 N 0.432
OPUNC02G25020 Oryza punctata OPUNC02G25020 N 0.432
ORUFI02G28820 Oryza rufipogon ORUFI02G28820 N 0.432
OS02G0670400 Oryza sativa OS02G0670400 N 0.432
Eucgr.H01676 Eucalyptus grandis Eucgr.H01676 I 0.431
gene01264-v1.0-hybrid Fragaria vesca gene01264-v1.0-hybrid I 0.431
gene01265-v1.0-hybrid Fragaria vesca gene01265-v1.0-hybrid I 0.431
SSRP1 Arabidopsis thaliana AT3G28730 I 0.427
BRADI3G12920 Brachypodium distachyon BRADI3G12920 I 0.427
ATHMG Arabidopsis lyrata scaffold_500854.1 I 0.427
Bostr.0556s0524 Boechera stricta Bostr.0556s0524 I 0.427
Cagra.0535s0005 Capsella grandiflora Cagra.0535s0005 I 0.427
Carubv10016819m.g Capsella rubella Carubv10016819m.g I 0.427
Thhalv10003803m.g Eutrema salsugineum Thhalv10003803m.g I 0.427
BGIOSGA027814 Oryza indica BGIOSGA027814 I 0.425
BGIOSGA027819 Oryza indica BGIOSGA027819 I 0.425
OB08G10120 Oryza brachyantha OB08G10120 N 0.425
OBART08G00070 Oryza barthii OBART08G00070 I 0.425
OGLUM08G00090 Oryza glumaepatula OGLUM08G00090 I 0.425
OLONG_014445 Oryza longistaminata OLONG_014445 I 0.425
ONIVA08G00070 Oryza nivara ONIVA08G00070 I 0.425
OPUNC08G00150 Oryza punctata OPUNC08G00150 I 0.425
ORUFI08G00080 Oryza rufipogon ORUFI08G00080 I 0.425
OS08G0101100 Oryza sativa OS08G0101100 I 0.425
TCM_007659 Theobroma cacao TCM_007659 I 0.424
MTR_1g022345 Medicago truncatula MTR_1g022345 I 0.421
GRMZM2G013821 Zea mays GRMZM2G013821 N 0.420
GRMZM2G156785 Zea mays GRMZM2G156785 N 0.420
LPERR02G22240 Leersia perrieri LPERR02G22240 N 0.420
Sb04g032180 Sorghum bicolor Sb04g032180 N 0.420
Si018635m.g Setaria italica Si018635m.g N 0.420
Solyc04g008820.2 Solanum lycopersicum Solyc04g008820.2 I 0.420
Pavir.J38684 Panicum virgatum Pavir.J38684 N 0.420
Pavir.J40489 Panicum virgatum Pavir.J40489 N 0.420
AMTR_s00171p00070550 Amborella trichopoda AMTR_s00171p00070550 I 0.419
EMIHUDRAFT_59608 Emiliania huxleyi EMIHUDRAFT_59608 N 0.418
Cla009222 Citrullus lanatus Cla009222 I 0.418
Cucsa.300030 Cucumis sativus Cucsa.300030 I 0.418
Aquca_035_00040 Aquilegia coerulea Aquca_035_00040 I 0.418
GB47837 Apis mellifera GB47837 N 0.417
SINV22588 Solenopsis invicta SINV22588 N 0.417
Cflo_05893--XP_624266.1_APIME Camponotus floridanus Cflo_05893--XP_624266.1_APIME N 0.417
Hsal_13112--XP_624266.1_APIME Harpegnathos saltator Hsal_13112--XP_624266.1_APIME N 0.417
Eucgr.J00336 Eucalyptus grandis Eucgr.J00336 I 0.417
evm.TU.supercontig_211.6 Carica papaya evm.TU.supercontig_211.6 I 0.417