Traes_5AL_D1358AF6E (Triticum aestivum)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 Traes_5AL_D1358AF6E T332992_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMG-1
M02720_2.00 		Pisum sativum
STYGTDHTY
RADHACRAS		 SELEX
Mathelier et al.(2014)
MA0044.1 		0.434 0.594
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Traes_5AL_D1358AF6E.1 Sox 17 82

Links

Other Sox family TFs
Other Triticum aestivum TFs

119 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GRMZM2G066528 Zea mays GRMZM2G066528 I 0.517
LPERR09G14820 Leersia perrieri LPERR09G14820 I 0.517
OB09G25530 Oryza brachyantha OB09G25530 I 0.517
TRIUR3_27273 Triticum urartu TRIUR3_27273 I 0.517
OMERI09G14100 Oryza meridionalis OMERI09G14100 I 0.510
ONIVA09G20030 Oryza nivara ONIVA09G20030 I 0.510
ORGLA09G0150800 Oryza glaberrima ORGLA09G0150800 I 0.510
ORUFI09G20440 Oryza rufipogon ORUFI09G20440 I 0.510
OS09G0551600 Oryza sativa OS09G0551600 I 0.510
Sb02g032140 Sorghum bicolor Sb02g032140 I 0.507
Si031512m.g Setaria italica Si031512m.g I 0.507
Pavir.Ba01379 Panicum virgatum Pavir.Ba01379 I 0.507
Pavir.Bb02550 Panicum virgatum Pavir.Bb02550 I 0.507
Solyc03g032130.2 Solanum lycopersicum Solyc03g032130.2 N 0.500
PGSC0003DMG400018685 Solanum tuberosum PGSC0003DMG400018685 I 0.499
Traes_5DL_DD9491112 Triticum aestivum Traes_5DL_DD9491112 I 0.498
HMGB3 Arabidopsis thaliana AT1G20696 I 0.489
Aquca_015_00344 Aquilegia coerulea Aquca_015_00344 I 0.488
MDP0000242568 Malus domestica MDP0000242568 I 0.485
PGSC0003DMG400001567 Solanum tuberosum PGSC0003DMG400001567 I 0.477
PRUPE_ppa011596mg Prunus persica PRUPE_ppa011596mg I 0.477
Solyc02g082700.2 Solanum lycopersicum Solyc02g082700.2 I 0.477
Pm026798 Prunus mume Pm026798 I 0.477
Eucgr.J02535 Eucalyptus grandis Eucgr.J02535 I 0.474
POPTR_0005s10440 Populus trichocarpa POPTR_0005s10440 I 0.473
SapurV1A.0085s0030 Salix purpurea SapurV1A.0085s0030 I 0.473
Traes_5BL_9CC98DD38 Triticum aestivum Traes_5BL_9CC98DD38 I 0.471
mgf009330m Mimulus guttatus mgf009330m I 0.471
GRMZM2G162284 Zea mays GRMZM2G162284 I 0.467
PRUPE_ppa012972mg Prunus persica PRUPE_ppa012972mg I 0.467
Gorai.002G115100 Gossypium raimondii Gorai.002G115100 I 0.467
orange1.1g031906m.g Citrus sinensis orange1.1g031906m.g I 0.467
gene13043-v1.0-hybrid Fragaria vesca gene13043-v1.0-hybrid I 0.466
SapurV1A.0016s0600 Salix purpurea SapurV1A.0016s0600 I 0.463
BRADI4G37247 Brachypodium distachyon BRADI4G37247 I 0.461
Bo7g061420 Brassica oleracea Bo7g061420 I 0.460
Bo8g070350 Brassica oleracea Bo8g070350 I 0.460
Bra025838 Brassica rapa Bra025838 I 0.460
HMGB3 Arabidopsis lyrata fgenesh2_kg.1__2258__AT1G20696.3 I 0.460
Bostr.7128s0662 Boechera stricta Bostr.7128s0662 I 0.460
Cagra.6160s0027 Capsella grandiflora Cagra.6160s0027 I 0.460
Carubv10012681m.g Capsella rubella Carubv10012681m.g I 0.460
VIT_04s0044g00110 Vitis vinifera VIT_04s0044g00110 I 0.459
VIT_18s0122g01190 Vitis vinifera VIT_18s0122g01190 I 0.459
MDP0000607529 Malus domestica MDP0000607529 I 0.457
HMGB1 Arabidopsis thaliana AT3G51880 I 0.455
Bo7g101270 Brassica oleracea Bo7g101270 I 0.455
HMGB1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5001281 I 0.455
Bostr.6864s0060 Boechera stricta Bostr.6864s0060 I 0.455
Cagra.1043s0022 Capsella grandiflora Cagra.1043s0022 I 0.455
Thhalv10010751m.g Eutrema salsugineum Thhalv10010751m.g I 0.455
cassava24859.valid.m1 Manihot esculenta cassava24859.valid.m1 I 0.453
mgf006113m Mimulus guttatus mgf006113m I 0.453
mgf008076m Mimulus guttatus mgf008076m I 0.453
mgf016608m Mimulus guttatus mgf016608m I 0.453
mgf014518m Mimulus guttatus mgf014518m I 0.452
Lus10012252.g Linum usitatissimum Lus10012252.g I 0.452
Lus10016025.g Linum usitatissimum Lus10016025.g I 0.452
29669.m000844 Ricinus communis 29669.m000844 I 0.449
Eucgr.F03571 Eucalyptus grandis Eucgr.F03571 I 0.449
TCM_000068 Theobroma cacao TCM_000068 I 0.448
Ca_09896 Cicer arietinum Ca_09896 I 0.448
Aquca_045_00054 Aquilegia coerulea Aquca_045_00054 I 0.448
PDK_20s1306741g001 Phoenix dactylifera PDK_20s1306741g001 I 0.448
Cla009093 Citrullus lanatus Cla009093 I 0.445
Cucsa.323100 Cucumis sativus Cucsa.323100 I 0.445
Bo8g081200 Brassica oleracea Bo8g081200 I 0.442
PRUPE_ppa012424mg Prunus persica PRUPE_ppa012424mg I 0.442
Pm018913 Prunus mume Pm018913 I 0.442
Carubv10018109m.g Capsella rubella Carubv10018109m.g I 0.442
gene20961-v1.0-hybrid Fragaria vesca gene20961-v1.0-hybrid I 0.442
MDP0000362980 Malus domestica MDP0000362980 I 0.442
MDP0000757111 Malus domestica MDP0000757111 I 0.442
MLOC_68913 Hordeum vulgare MLOC_68913 N 0.441
30170.m014386 Ricinus communis 30170.m014386 I 0.441
cassava18624.valid.m1 Manihot esculenta cassava18624.valid.m1 I 0.441
cassava18625.valid.m1 Manihot esculenta cassava18625.valid.m1 I 0.441
cassava18626.valid.m1 Manihot esculenta cassava18626.valid.m1 I 0.441
cassava35948.valid.m1 Manihot esculenta cassava35948.valid.m1 I 0.441
MDP0000275042 Malus domestica MDP0000275042 I 0.441
MTR_3g115580 Medicago truncatula MTR_3g115580 I 0.440
MTR_8g073345 Medicago truncatula MTR_8g073345 I 0.440
TCM_034406 Theobroma cacao TCM_034406 I 0.439
Ciclev10002782m.g Citrus clementina Ciclev10002782m.g I 0.439
Gorai.005G114500 Gossypium raimondii Gorai.005G114500 I 0.439
PDK_20s1434871g001 Phoenix dactylifera PDK_20s1434871g001 I 0.438
LjT35D08.150.nd Lotus japonicus LjT35D08.150.nd I 0.436
PDK_20s1781681g001 Phoenix dactylifera PDK_20s1781681g001 N 0.435
HMGB2 Arabidopsis thaliana AT1G20693 I 0.434
HMGB2 Arabidopsis lyrata fgenesh2_kg.1__2255__AT1G20693.2 I 0.434
POPTR_0002s01000 Populus trichocarpa POPTR_0002s01000 I 0.434
XM_002306945.1 Populus trichocarpa POPTR_0005s27390 I 0.434
HMG-1 Pisum sativum Q41026_PEA D 0.434
Bostr.7128s0663 Boechera stricta Bostr.7128s0663 I 0.434
Cagra.6160s0028 Capsella grandiflora Cagra.6160s0028 I 0.434
Carubv10010586m.g Capsella rubella Carubv10010586m.g I 0.434
SapurV1A.0266s0310 Salix purpurea SapurV1A.0266s0310 I 0.434
Bo5g030580 Brassica oleracea Bo5g030580 I 0.433
Thhalv10009371m.g Eutrema salsugineum Thhalv10009371m.g I 0.432
AMTR_s00044p00160130 Amborella trichopoda AMTR_s00044p00160130 I 0.431
Traes_7AL_364A6E96F Triticum aestivum Traes_7AL_364A6E96F N 0.431
Traes_7BL_F45C15FA2 Triticum aestivum Traes_7BL_F45C15FA2 N 0.431
Traes_7DL_0CEFCB39D Triticum aestivum Traes_7DL_0CEFCB39D N 0.431
Aquca_007_00897 Aquilegia coerulea Aquca_007_00897 I 0.431
Thhalv10009970m.g Eutrema salsugineum Thhalv10009970m.g I 0.430
MTR_7g068280 Medicago truncatula MTR_7g068280 I 0.427
GLYMA09G33070 Glycine max GLYMA09G33070 I 0.425
GLYMA16G22060 Glycine max GLYMA16G22060 I 0.425
mgf016363m Mimulus guttatus mgf016363m I 0.425
Aquca_004_00335 Aquilegia coerulea Aquca_004_00335 I 0.424
GSMUA_Achr2G03630_001 Musa acuminata GSMUA_Achr2G03630_001 I 0.421
GSMUA_Achr9G21200_001 Musa acuminata GSMUA_Achr9G21200_001 I 0.421
AMTR_s00029p00240750 Amborella trichopoda AMTR_s00029p00240750 I 0.420
POPTR_0010s19720 Populus trichocarpa POPTR_0010s19720 I 0.420
VIT_13s0067g00640 Vitis vinifera VIT_13s0067g00640 I 0.420
GLYMA04G01840 Glycine max GLYMA04G01840 I 0.418
GLYMA06G01970 Glycine max GLYMA06G01970 I 0.418
MTR_5g024180 Medicago truncatula MTR_5g024180 I 0.417
Bra002073 Brassica rapa Bra002073 I 0.416