CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Traes_7AL_364A6E96F
(
Triticum aestivum
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00505 (HMG_box)
IPR000910
Traes_7AL_364A6E96F
T333012_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Traes_7AL_364A6E96F.2
Sox
1
59
MYEFREEFKQKNPKNKSVAAVGKAAGERWKSLSESEKAPYVAKANKLKGEYNKAIAAYN
Links
Other
Sox
family TFs
Other
Triticum aestivum
TFs
97 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Traes_7DL_0CEFCB39D
Triticum aestivum
Traes_7DL_0CEFCB39D
N
0.741
PDK_20s1781681g001
Phoenix dactylifera
PDK_20s1781681g001
N
0.711
Traes_7BL_F45C15FA2
Triticum aestivum
Traes_7BL_F45C15FA2
N
0.707
Gorai.002G115100
Gossypium raimondii
Gorai.002G115100
I
0.647
orange1.1g031906m.g
Citrus sinensis
orange1.1g031906m.g
I
0.647
MDP0000242568
Malus domestica
MDP0000242568
I
0.624
PDK_20s1434871g001
Phoenix dactylifera
PDK_20s1434871g001
I
0.558
HMGB3
Arabidopsis thaliana
AT1G20696
I
0.537
Traes_3DL_21C50DDF5
Triticum aestivum
Traes_3DL_21C50DDF5
N
0.533
MTR_5g024180
Medicago truncatula
MTR_5g024180
I
0.523
MLOC_68913
Hordeum vulgare
MLOC_68913
N
0.522
Solyc03g032130.2
Solanum lycopersicum
Solyc03g032130.2
N
0.508
MLOC_78556
Hordeum vulgare
MLOC_78556
I
0.505
LCUP018488
Lucilia cuprina
LCUP018488
N
0.505
TRIUR3_13577
Triticum urartu
TRIUR3_13577
I
0.505
F775_27510
Aegilops tauschii
F775_27510
I
0.505
GRMZM5G834758
Zea mays
GRMZM5G834758
I
0.500
OB06G35870
Oryza brachyantha
OB06G35870
I
0.500
BRADI1G29730
Brachypodium distachyon
BRADI1G29730
I
0.500
Sb10g030910
Sorghum bicolor
Sb10g030910
I
0.500
Traes_5DL_BCFE39D13
Triticum aestivum
Traes_5DL_BCFE39D13
N
0.495
DILT_0001977801
Diphyllobothrium latum
DILT_0001977801
N
0.495
OMERI06G28030
Oryza meridionalis
OMERI06G28030
I
0.493
OPUNC06G25640
Oryza punctata
OPUNC06G25640
I
0.493
OLONG_007465
Oryza longistaminata
OLONG_007465
I
0.493
Si007288m.g
Setaria italica
Si007288m.g
I
0.493
Pavir.J04920
Panicum virgatum
Pavir.J04920
I
0.493
Pavir.Db00040
Panicum virgatum
Pavir.Db00040
I
0.493
OGLUM06G29480
Oryza glumaepatula
OGLUM06G29480
I
0.493
OS06G0728000
Oryza sativa
OS06G0728000
I
0.493
ORUFI06G30030
Oryza rufipogon
ORUFI06G30030
I
0.493
ORGLA06G0238300
Oryza glaberrima
ORGLA06G0238300
I
0.493
ONIVA06G31070
Oryza nivara
ONIVA06G31070
I
0.493
OBART06G28090
Oryza barthii
OBART06G28090
I
0.493
LPERR06G23570
Leersia perrieri
LPERR06G23570
I
0.493
TTAC_0000838901
Hydatigera taeniaeformis
TTAC_0000838901
N
0.493
GLYMA20G01570
Glycine max
GLYMA20G01570
N
0.489
BGLB013830
Biomphalaria glabrata
BGLB013830
N
0.483
GSMUA_Achr2G03630_001
Musa acuminata
GSMUA_Achr2G03630_001
I
0.480
GSMUA_Achr9G21200_001
Musa acuminata
GSMUA_Achr9G21200_001
I
0.480
D917_01243
Trichinella nativa
D917_01243
N
0.478
D917_08464
Trichinella nativa
D917_08464
N
0.478
Gorai.011G042300
Gossypium raimondii
Gorai.011G042300
N
0.476
OLONG_000335
Oryza longistaminata
OLONG_000335
N
0.474
GSMUA_Achr11G07320_001
Musa acuminata
GSMUA_Achr11G07320_001
I
0.471
GSMUA_AchrUn_randomG22010_001
Musa acuminata
GSMUA_AchrUn_randomG22010_001
I
0.471
MCINX003696
Melitaea cinxia
MCINX003696
N
0.468
GRMZM2G013821
Zea mays
GRMZM2G013821
N
0.461
GRMZM2G156785
Zea mays
GRMZM2G156785
N
0.461
TRIUR3_17277
Triticum urartu
TRIUR3_17277
N
0.456
estExt_fgenesh1_pm.C_880025
Physcomitrella patens
estExt_fgenesh1_pm.C_880025
I
0.455
gw1.106.59.1
Physcomitrella patens
gw1.106.59.1
I
0.454
gw1.106.60.1
Physcomitrella patens
gw1.106.60.1
I
0.454
SVUK_0000827101
Strongylus vulgaris
SVUK_0000827101
N
0.453
GSMUA_Achr10G07270_001
Musa acuminata
GSMUA_Achr10G07270_001
I
0.453
gene00778-v1.0-hybrid
Fragaria vesca
gene00778-v1.0-hybrid
N
0.451
DICVIV_04699
Dictyocaulus viviparus
DICVIV_04699
N
0.451
PRUPE_ppa007518mg
Prunus persica
PRUPE_ppa007518mg
I
0.449
Pm002934
Prunus mume
Pm002934
I
0.449
GPLIN_000847800
Globodera pallida
GPLIN_000847800
N
0.448
AMTR_s00044p00160130
Amborella trichopoda
AMTR_s00044p00160130
I
0.448
Ca_10725
Cicer arietinum
Ca_10725
I
0.442
Eucgr.A00506
Eucalyptus grandis
Eucgr.A00506
I
0.439
HMGB1
Vitis vinifera
VIT_08s0007g02200
I
0.439
PGSC0003DMG400008501
Solanum tuberosum
PGSC0003DMG400008501
I
0.439
Gorai.002G263800
Gossypium raimondii
Gorai.002G263800
I
0.439
F775_32121
Aegilops tauschii
F775_32121
N
0.438
cassava6450.valid.m1
Manihot esculenta
cassava6450.valid.m1
N
0.438
CTRG_00206
Candida tropicalis
CTRG_00206
I
0.437
Bostr.7128s0663
Boechera stricta
Bostr.7128s0663
I
0.436
HMGB2
Arabidopsis thaliana
AT1G20693
I
0.436
ANCCAN_05715
Ancylostoma caninum
ANCCAN_05715
N
0.436
HMGB2
Arabidopsis lyrata
fgenesh2_kg.1__2255__AT1G20693.2
I
0.436
Carubv10010586m.g
Capsella rubella
Carubv10010586m.g
I
0.436
Cagra.6160s0028
Capsella grandiflora
Cagra.6160s0028
I
0.436
HelroG167700
Helobdella robusta
HelroG167700
N
0.434
MTR_1g115220
Medicago truncatula
MTR_1g115220
I
0.432
mgf016363m
Mimulus guttatus
mgf016363m
I
0.432
evm.TU.supercontig_11.167
Carica papaya
evm.TU.supercontig_11.167
I
0.432
Ca_19340
Cicer arietinum
Ca_19340
I
0.432
Traes_5AL_D1358AF6E
Triticum aestivum
Traes_5AL_D1358AF6E
I
0.431
LEMA_P074670.1
Leptosphaeria maculans
LEMA_P074670.1
I
0.431
TELCIR_05563
Teladorsagia circumcincta
TELCIR_05563
N
0.430
chr5.CM0180.220.nd
Lotus japonicus
chr5.CM0180.220.nd
I
0.430
Gorai.006G181900
Gossypium raimondii
Gorai.006G181900
I
0.430
cassava24859.valid.m1
Manihot esculenta
cassava24859.valid.m1
I
0.428
W97_04494
Coniosporium apollinis
W97_04494
I
0.426
TCM_042534
Theobroma cacao
TCM_042534
I
0.423
MDP0000275042
Malus domestica
MDP0000275042
I
0.421
Bo7g014280
Brassica oleracea
Bo7g014280
I
0.420
GLYMA09G33070
Glycine max
GLYMA09G33070
I
0.419
GLYMA16G22060
Glycine max
GLYMA16G22060
I
0.419
GLYMA03G08270
Glycine max
GLYMA03G08270
I
0.415
Cla018386
Citrullus lanatus
Cla018386
I
0.415
GLYMA08G20341
Glycine max
GLYMA08G20341
N
0.415
EFA77534.1
Polysphondylium pallidum
EFA77534.1
N
0.415
GLYMA01G28820
Glycine max
GLYMA01G28820
I
0.415