OS09G0551600 (Oryza sativa)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 OS09G0551600 T331716_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMG-1
M02720_2.00 		Pisum sativum
STYGTDHTY
RADHACRAS		 SELEX
Mathelier et al.(2014)
MA0044.1 		0.607 0.652
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OS09T0551600-01 Sox 28 97

Links

Other Sox family TFs
Other Oryza sativa TFs

269 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
OMERI09G14100 Oryza meridionalis OMERI09G14100 I 0.741
ONIVA09G20030 Oryza nivara ONIVA09G20030 I 0.741
ORGLA09G0150800 Oryza glaberrima ORGLA09G0150800 I 0.741
ORUFI09G20440 Oryza rufipogon ORUFI09G20440 I 0.741
LPERR09G14820 Leersia perrieri LPERR09G14820 I 0.735
OB09G25530 Oryza brachyantha OB09G25530 I 0.735
GRMZM2G066528 Zea mays GRMZM2G066528 I 0.706
TRIUR3_27273 Triticum urartu TRIUR3_27273 I 0.706
Sb02g032140 Sorghum bicolor Sb02g032140 I 0.696
Si031512m.g Setaria italica Si031512m.g I 0.696
Pavir.Ba01379 Panicum virgatum Pavir.Ba01379 I 0.696
Pavir.Bb02550 Panicum virgatum Pavir.Bb02550 I 0.696
Traes_5DL_DD9491112 Triticum aestivum Traes_5DL_DD9491112 I 0.687
PGSC0003DMG400018685 Solanum tuberosum PGSC0003DMG400018685 I 0.672
PGSC0003DMG400001567 Solanum tuberosum PGSC0003DMG400001567 I 0.665
Solyc02g082700.2 Solanum lycopersicum Solyc02g082700.2 I 0.665
Traes_5BL_9CC98DD38 Triticum aestivum Traes_5BL_9CC98DD38 I 0.660
GRMZM2G162284 Zea mays GRMZM2G162284 I 0.656
gene13043-v1.0-hybrid Fragaria vesca gene13043-v1.0-hybrid I 0.655
BRADI4G37247 Brachypodium distachyon BRADI4G37247 I 0.650
TCM_000068 Theobroma cacao TCM_000068 I 0.650
VIT_04s0044g00110 Vitis vinifera VIT_04s0044g00110 I 0.648
VIT_18s0122g01190 Vitis vinifera VIT_18s0122g01190 I 0.648
Aquca_015_00344 Aquilegia coerulea Aquca_015_00344 I 0.648
mgf009330m Mimulus guttatus mgf009330m I 0.645
cassava24859.valid.m1 Manihot esculenta cassava24859.valid.m1 I 0.642
Eucgr.F03571 Eucalyptus grandis Eucgr.F03571 I 0.638
PRUPE_ppa011596mg Prunus persica PRUPE_ppa011596mg I 0.637
Pm026798 Prunus mume Pm026798 I 0.637
Aquca_045_00054 Aquilegia coerulea Aquca_045_00054 I 0.636
PDK_20s1306741g001 Phoenix dactylifera PDK_20s1306741g001 I 0.636
POPTR_0005s10440 Populus trichocarpa POPTR_0005s10440 I 0.633
Cla009093 Citrullus lanatus Cla009093 I 0.633
Cucsa.323100 Cucumis sativus Cucsa.323100 I 0.633
SapurV1A.0085s0030 Salix purpurea SapurV1A.0085s0030 I 0.633
PRUPE_ppa012424mg Prunus persica PRUPE_ppa012424mg I 0.630
Pm018913 Prunus mume Pm018913 I 0.630
30170.m014386 Ricinus communis 30170.m014386 I 0.630
cassava18624.valid.m1 Manihot esculenta cassava18624.valid.m1 I 0.630
cassava18625.valid.m1 Manihot esculenta cassava18625.valid.m1 I 0.630
cassava18626.valid.m1 Manihot esculenta cassava18626.valid.m1 I 0.630
cassava35948.valid.m1 Manihot esculenta cassava35948.valid.m1 I 0.630
MDP0000275042 Malus domestica MDP0000275042 I 0.630
MDP0000362980 Malus domestica MDP0000362980 I 0.630
MDP0000757111 Malus domestica MDP0000757111 I 0.630
PRUPE_ppa012972mg Prunus persica PRUPE_ppa012972mg I 0.627
TCM_034406 Theobroma cacao TCM_034406 I 0.627
mgf016363m Mimulus guttatus mgf016363m I 0.627
Ciclev10002782m.g Citrus clementina Ciclev10002782m.g I 0.627
Gorai.002G115100 Gossypium raimondii Gorai.002G115100 I 0.627
Gorai.005G114500 Gossypium raimondii Gorai.005G114500 I 0.627
orange1.1g031906m.g Citrus sinensis orange1.1g031906m.g I 0.627
Lus10012252.g Linum usitatissimum Lus10012252.g I 0.626
Lus10016025.g Linum usitatissimum Lus10016025.g I 0.626
POPTR_0002s01000 Populus trichocarpa POPTR_0002s01000 I 0.623
XM_002306945.1 Populus trichocarpa POPTR_0005s27390 I 0.623
SapurV1A.0016s0600 Salix purpurea SapurV1A.0016s0600 I 0.623
SapurV1A.0266s0310 Salix purpurea SapurV1A.0266s0310 I 0.623
AMTR_s00044p00160130 Amborella trichopoda AMTR_s00044p00160130 I 0.620
HMGB3 Arabidopsis thaliana AT1G20696 I 0.620
Bo7g061420 Brassica oleracea Bo7g061420 I 0.620
Bo8g070350 Brassica oleracea Bo8g070350 I 0.620
Bra025838 Brassica rapa Bra025838 I 0.620
HMGB3 Arabidopsis lyrata fgenesh2_kg.1__2258__AT1G20696.3 I 0.620
Bostr.7128s0662 Boechera stricta Bostr.7128s0662 I 0.620
Cagra.6160s0027 Capsella grandiflora Cagra.6160s0027 I 0.620
Carubv10012681m.g Capsella rubella Carubv10012681m.g I 0.620
Thhalv10009371m.g Eutrema salsugineum Thhalv10009371m.g I 0.620
mgf014518m Mimulus guttatus mgf014518m I 0.619
MDP0000607529 Malus domestica MDP0000607529 I 0.617
Ciclev10032930m.g Citrus clementina Ciclev10032930m.g I 0.616
orange1.1g029982m.g Citrus sinensis orange1.1g029982m.g I 0.616
GLYMA09G33070 Glycine max GLYMA09G33070 I 0.614
GLYMA16G22060 Glycine max GLYMA16G22060 I 0.614
mgf006113m Mimulus guttatus mgf006113m I 0.613
mgf008076m Mimulus guttatus mgf008076m I 0.613
mgf016608m Mimulus guttatus mgf016608m I 0.613
GSMUA_Achr2G03630_001 Musa acuminata GSMUA_Achr2G03630_001 I 0.610
GSMUA_Achr9G21200_001 Musa acuminata GSMUA_Achr9G21200_001 I 0.610
LjT35D08.150.nd Lotus japonicus LjT35D08.150.nd I 0.610
AMTR_s00029p00240750 Amborella trichopoda AMTR_s00029p00240750 I 0.609
POPTR_0010s19720 Populus trichocarpa POPTR_0010s19720 I 0.609
VIT_13s0067g00640 Vitis vinifera VIT_13s0067g00640 I 0.609
29669.m000844 Ricinus communis 29669.m000844 I 0.609
HMGB1 Arabidopsis thaliana AT3G51880 I 0.608
Bo7g101270 Brassica oleracea Bo7g101270 I 0.608
HMGB1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5001281 I 0.608
Ca_09896 Cicer arietinum Ca_09896 I 0.608
Bostr.6864s0060 Boechera stricta Bostr.6864s0060 I 0.608
Cagra.1043s0022 Capsella grandiflora Cagra.1043s0022 I 0.608
Thhalv10010751m.g Eutrema salsugineum Thhalv10010751m.g I 0.608
GLYMA04G01840 Glycine max GLYMA04G01840 I 0.607
GLYMA06G01970 Glycine max GLYMA06G01970 I 0.607
HMG-1 Pisum sativum Q41026_PEA D 0.607
evm.TU.supercontig_365.4 Carica papaya evm.TU.supercontig_365.4 I 0.607
Eucgr.J02535 Eucalyptus grandis Eucgr.J02535 I 0.605
GSMUA_Achr11G07320_001 Musa acuminata GSMUA_Achr11G07320_001 I 0.600
GSMUA_AchrUn_randomG22010_001 Musa acuminata GSMUA_AchrUn_randomG22010_001 I 0.600
MTR_3g115580 Medicago truncatula MTR_3g115580 I 0.600
MTR_7g068280 Medicago truncatula MTR_7g068280 I 0.600
MTR_8g073345 Medicago truncatula MTR_8g073345 I 0.600
Ca_19340 Cicer arietinum Ca_19340 I 0.600
LPERR06G23570 Leersia perrieri LPERR06G23570 I 0.598
OBART06G28090 Oryza barthii OBART06G28090 I 0.598
OGLUM06G29480 Oryza glumaepatula OGLUM06G29480 I 0.598
OLONG_007465 Oryza longistaminata OLONG_007465 I 0.598
OMERI06G28030 Oryza meridionalis OMERI06G28030 I 0.598
ONIVA06G31070 Oryza nivara ONIVA06G31070 I 0.598
OPUNC06G25640 Oryza punctata OPUNC06G25640 I 0.598
ORGLA06G0238300 Oryza glaberrima ORGLA06G0238300 I 0.598
ORUFI06G30030 Oryza rufipogon ORUFI06G30030 I 0.598
OS06G0728000 Oryza sativa OS06G0728000 I 0.598
Si007288m.g Setaria italica Si007288m.g I 0.598
Pavir.Db00040 Panicum virgatum Pavir.Db00040 I 0.598
Pavir.J04920 Panicum virgatum Pavir.J04920 I 0.598
SapurV1A.0825s0160 Salix purpurea SapurV1A.0825s0160 I 0.597
Bo8g081200 Brassica oleracea Bo8g081200 I 0.596
TCM_042534 Theobroma cacao TCM_042534 I 0.596
Carubv10018109m.g Capsella rubella Carubv10018109m.g I 0.596
Ciclev10026715m.g Citrus clementina Ciclev10026715m.g I 0.595
HMGB2 Arabidopsis thaliana AT1G20693 I 0.594
HMGB2 Arabidopsis lyrata fgenesh2_kg.1__2255__AT1G20693.2 I 0.594
Bostr.7128s0663 Boechera stricta Bostr.7128s0663 I 0.594
Cagra.6160s0028 Capsella grandiflora Cagra.6160s0028 I 0.594
Carubv10010586m.g Capsella rubella Carubv10010586m.g I 0.594
evm.TU.supercontig_11.167 Carica papaya evm.TU.supercontig_11.167 I 0.594
Gorai.009G186800 Gossypium raimondii Gorai.009G186800 I 0.594
Bo5g030580 Brassica oleracea Bo5g030580 I 0.593
PGSC0003DMG400008501 Solanum tuberosum PGSC0003DMG400008501 I 0.593
HMGB1 Vitis vinifera VIT_08s0007g02200 I 0.593
Eucgr.A00506 Eucalyptus grandis Eucgr.A00506 I 0.593
evm.TU.supercontig_26.174 Carica papaya evm.TU.supercontig_26.174 I 0.592
BRADI1G29730 Brachypodium distachyon BRADI1G29730 I 0.591
GRMZM5G834758 Zea mays GRMZM5G834758 I 0.591
OB06G35870 Oryza brachyantha OB06G35870 I 0.591
Sb10g030910 Sorghum bicolor Sb10g030910 I 0.591
Lus10028298.g Linum usitatissimum Lus10028298.g I 0.590
Thhalv10009970m.g Eutrema salsugineum Thhalv10009970m.g I 0.590
Lus10040192.g Linum usitatissimum Lus10040192.g I 0.588
Gorai.002G263800 Gossypium raimondii Gorai.002G263800 I 0.587
Gorai.001G198900 Gossypium raimondii Gorai.001G198900 I 0.586
F775_27510 Aegilops tauschii F775_27510 I 0.585
MLOC_78556 Hordeum vulgare MLOC_78556 I 0.585
TRIUR3_13577 Triticum urartu TRIUR3_13577 I 0.585
Bo7g014280 Brassica oleracea Bo7g014280 I 0.584
Aquca_004_00335 Aquilegia coerulea Aquca_004_00335 I 0.584
GSMUA_Achr10G07270_001 Musa acuminata GSMUA_Achr10G07270_001 I 0.583
PRUPE_ppa007518mg Prunus persica PRUPE_ppa007518mg I 0.583
Pm002934 Prunus mume Pm002934 I 0.583
orange1.1g031973m.g Citrus sinensis orange1.1g031973m.g I 0.583
PK29786.1 Cannabis sativa PK29786.1 I 0.582
Gorai.006G181900 Gossypium raimondii Gorai.006G181900 I 0.579
MTR_5g024180 Medicago truncatula MTR_5g024180 I 0.577
SapurV1A.0061s0170 Salix purpurea SapurV1A.0061s0170 I 0.577
SapurV1A.2780s0020 Salix purpurea SapurV1A.2780s0020 I 0.577
Bra002073 Brassica rapa Bra002073 I 0.576
PK11149.1 Cannabis sativa PK11149.1 I 0.573
HMGB4 Arabidopsis thaliana AT2G17560 I 0.572
Bo1g006360 Brassica oleracea Bo1g006360 I 0.572
Bo7g117500 Brassica oleracea Bo7g117500 I 0.572
Bra011624 Brassica rapa Bra011624 I 0.572
Bra017723 Brassica rapa Bra017723 I 0.572
HMGB4 Arabidopsis lyrata fgenesh2_kg.3__3350__AT2G17560.1 I 0.572
Bostr.18351s0219 Boechera stricta Bostr.18351s0219 I 0.572
Cagra.1891s0017 Capsella grandiflora Cagra.1891s0017 I 0.572
Carubv10014808m.g Capsella rubella Carubv10014808m.g I 0.572
Cucsa.067200 Cucumis sativus Cucsa.067200 I 0.571
mgf000913m Mimulus guttatus mgf000913m I 0.571
GLYMA01G28820 Glycine max GLYMA01G28820 I 0.570
GLYMA03G08270 Glycine max GLYMA03G08270 I 0.570
POPTR_0008s06730 Populus trichocarpa POPTR_0008s06730 I 0.570
Cla018386 Citrullus lanatus Cla018386 I 0.570
evm.TU.supercontig_19.183 Carica papaya evm.TU.supercontig_19.183 I 0.569
Cla023817 Citrullus lanatus Cla023817 I 0.568
Cucsa.272190 Cucumis sativus Cucsa.272190 I 0.568
Ciclev10012868m.g Citrus clementina Ciclev10012868m.g I 0.568
gene20487-v1.0-hybrid Fragaria vesca gene20487-v1.0-hybrid I 0.568
gene20961-v1.0-hybrid Fragaria vesca gene20961-v1.0-hybrid I 0.568
orange1.1g030283m.g Citrus sinensis orange1.1g030283m.g I 0.568
Ca_10725 Cicer arietinum Ca_10725 I 0.565
TCM_021706 Theobroma cacao TCM_021706 I 0.560
Bra037266 Brassica rapa Bra037266 I 0.559
Thhalv10022905m.g Eutrema salsugineum Thhalv10022905m.g I 0.559
cassava42371.valid.m1 Manihot esculenta cassava42371.valid.m1 I 0.556
cassava42372.valid.m1 Manihot esculenta cassava42372.valid.m1 I 0.556
cassava42373.valid.m1 Manihot esculenta cassava42373.valid.m1 I 0.556
cassava44923.m1 Manihot esculenta cassava44923.m1 I 0.556
GSMUA_Achr4G25860_001 Musa acuminata GSMUA_Achr4G25860_001 I 0.555
cassava23716.valid.m1 Manihot esculenta cassava23716.valid.m1 I 0.555
29701.m000600 Ricinus communis 29701.m000600 I 0.549
chr1.CM0113.560.nc Lotus japonicus chr1.CM0113.560.nc I 0.548
MTR_1g115220 Medicago truncatula MTR_1g115220 I 0.547
Ca_04825 Cicer arietinum Ca_04825 I 0.547
chr5.CM0180.220.nd Lotus japonicus chr5.CM0180.220.nd I 0.547
Thhalv10026524m.g Eutrema salsugineum Thhalv10026524m.g I 0.546
Aquca_007_00897 Aquilegia coerulea Aquca_007_00897 I 0.542
GSMUA_Achr2G11060_001 Musa acuminata GSMUA_Achr2G11060_001 I 0.539
Gorai.013G018500 Gossypium raimondii Gorai.013G018500 I 0.539
Ca_05351 Cicer arietinum Ca_05351 I 0.535
29600.m000548 Ricinus communis 29600.m000548 I 0.535
MTR_7g082820 Medicago truncatula MTR_7g082820 I 0.528
SELMODRAFT_175895 Selaginella moellendorffii SELMODRAFT_175895 I 0.526
SELMODRAFT_38818 Selaginella moellendorffii SELMODRAFT_38818 I 0.526
PK14705.1 Cannabis sativa PK14705.1 I 0.522
gw1.106.59.1 Physcomitrella patens gw1.106.59.1 I 0.517
gw1.106.60.1 Physcomitrella patens gw1.106.60.1 I 0.517
BGIOSGA023639 Oryza indica BGIOSGA023639 I 0.516
GLYMA20G23370 Glycine max GLYMA20G23370 I 0.514
Traes_5AL_D1358AF6E Triticum aestivum Traes_5AL_D1358AF6E I 0.510
Lus10035511.g Linum usitatissimum Lus10035511.g I 0.508
estExt_fgenesh1_pm.C_880025 Physcomitrella patens estExt_fgenesh1_pm.C_880025 I 0.507
SELMODRAFT_18312 Selaginella moellendorffii SELMODRAFT_18312 I 0.502
SELMODRAFT_18313 Selaginella moellendorffii SELMODRAFT_18313 I 0.502
Cagra.2350s0098 Capsella grandiflora Cagra.2350s0098 I 0.488
Carubv10005973m.g Capsella rubella Carubv10005973m.g I 0.488
GLYMA10G43440 Glycine max GLYMA10G43440 I 0.484
cassava17389.m1 Manihot esculenta cassava17389.m1 I 0.484
HMGB5 Arabidopsis lyrata Al_scaffold_0007_498 I 0.482
Bostr.7867s1415 Boechera stricta Bostr.7867s1415 I 0.482
PDK_20s1434871g001 Phoenix dactylifera PDK_20s1434871g001 I 0.482
SELMODRAFT_117986 Selaginella moellendorffii SELMODRAFT_117986 I 0.480
SELMODRAFT_75453 Selaginella moellendorffii SELMODRAFT_75453 I 0.480
gene18862-v1.0-hybrid Fragaria vesca gene18862-v1.0-hybrid I 0.478
orange1.1g044275m.g Citrus sinensis orange1.1g044275m.g I 0.467
HMGB6 Vitis vinifera VIT_10s0071g00870 I 0.465
HMGB5 Arabidopsis thaliana AT4G35570 I 0.450
GSMUA_Achr5G11630_001 Musa acuminata GSMUA_Achr5G11630_001 I 0.445
AMTR_s00109p00094550 Amborella trichopoda AMTR_s00109p00094550 I 0.443
PK27241.1 Cannabis sativa PK27241.1 I 0.437
BRADI3G12920 Brachypodium distachyon BRADI3G12920 I 0.434
Eucgr.H01676 Eucalyptus grandis Eucgr.H01676 I 0.431
Solyc04g008820.2 Solanum lycopersicum Solyc04g008820.2 I 0.427
BGIOSGA008782 Oryza indica BGIOSGA008782 N 0.425
BRADI3G51140 Brachypodium distachyon BRADI3G51140 N 0.425
OB02G34710 Oryza brachyantha OB02G34710 N 0.425
OBART02G27340 Oryza barthii OBART02G27340 N 0.425
OGLUM02G27900 Oryza glumaepatula OGLUM02G27900 N 0.425
OMERI02G26620 Oryza meridionalis OMERI02G26620 N 0.425
ONIVA02G29880 Oryza nivara ONIVA02G29880 N 0.425
OPUNC02G25020 Oryza punctata OPUNC02G25020 N 0.425
ORUFI02G28820 Oryza rufipogon ORUFI02G28820 N 0.425
OS02G0670400 Oryza sativa OS02G0670400 N 0.425
Cla009222 Citrullus lanatus Cla009222 I 0.424
Cucsa.300030 Cucumis sativus Cucsa.300030 I 0.424
gene01264-v1.0-hybrid Fragaria vesca gene01264-v1.0-hybrid I 0.424
gene01265-v1.0-hybrid Fragaria vesca gene01265-v1.0-hybrid I 0.424
SSRP1 Arabidopsis thaliana AT3G28730 I 0.420
ATHMG Arabidopsis lyrata scaffold_500854.1 I 0.420
Bostr.0556s0524 Boechera stricta Bostr.0556s0524 I 0.420
Cagra.0535s0005 Capsella grandiflora Cagra.0535s0005 I 0.420
Carubv10016819m.g Capsella rubella Carubv10016819m.g I 0.420
Thhalv10003803m.g Eutrema salsugineum Thhalv10003803m.g I 0.420
BGIOSGA027814 Oryza indica BGIOSGA027814 I 0.418
BGIOSGA027819 Oryza indica BGIOSGA027819 I 0.418
EMIHUDRAFT_59608 Emiliania huxleyi EMIHUDRAFT_59608 N 0.418
OB08G10120 Oryza brachyantha OB08G10120 N 0.418
OBART08G00070 Oryza barthii OBART08G00070 I 0.418
OGLUM08G00090 Oryza glumaepatula OGLUM08G00090 I 0.418
OLONG_014445 Oryza longistaminata OLONG_014445 I 0.418
ONIVA08G00070 Oryza nivara ONIVA08G00070 I 0.418
OPUNC08G00150 Oryza punctata OPUNC08G00150 I 0.418
ORUFI08G00080 Oryza rufipogon ORUFI08G00080 I 0.418
OS08G0101100 Oryza sativa OS08G0101100 I 0.418
TCM_007659 Theobroma cacao TCM_007659 I 0.418
Aquca_035_00040 Aquilegia coerulea Aquca_035_00040 I 0.418
GB47837 Apis mellifera GB47837 N 0.417
SINV22588 Solenopsis invicta SINV22588 N 0.417
Cflo_05893--XP_624266.1_APIME Camponotus floridanus Cflo_05893--XP_624266.1_APIME N 0.417
Hsal_13112--XP_624266.1_APIME Harpegnathos saltator Hsal_13112--XP_624266.1_APIME N 0.417