BRADI3G12920 (Brachypodium distachyon)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 BRADI3G12920 T326730_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMG-1
M02720_2.00 		Pisum sativum
STYGTDHTY
RADHACRAS		 SELEX
Mathelier et al.(2014)
MA0044.1 		0.432 0.561
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
BRADI3G12920.1 Sox 101 167

Links

Other Sox family TFs
Other Brachypodium distachyon TFs

154 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Traes_7AL_959534EDB Triticum aestivum Traes_7AL_959534EDB I 0.623
Traes_7BL_871FCAF2F Triticum aestivum Traes_7BL_871FCAF2F I 0.623
Traes_7DL_824BFE90C Triticum aestivum Traes_7DL_824BFE90C I 0.623
TRIUR3_35367 Triticum urartu TRIUR3_35367 I 0.623
MLOC_77667 Hordeum vulgare MLOC_77667 I 0.583
PK14705.1 Cannabis sativa PK14705.1 I 0.489
BGIOSGA027814 Oryza indica BGIOSGA027814 I 0.488
BGIOSGA027819 Oryza indica BGIOSGA027819 I 0.488
OBART08G00070 Oryza barthii OBART08G00070 I 0.488
OGLUM08G00090 Oryza glumaepatula OGLUM08G00090 I 0.488
OLONG_014445 Oryza longistaminata OLONG_014445 I 0.488
ONIVA08G00070 Oryza nivara ONIVA08G00070 I 0.488
OPUNC08G00150 Oryza punctata OPUNC08G00150 I 0.488
ORUFI08G00080 Oryza rufipogon ORUFI08G00080 I 0.488
OS08G0101100 Oryza sativa OS08G0101100 I 0.488
orange1.1g029982m.g Citrus sinensis orange1.1g029982m.g I 0.483
GRMZM2G125648 Zea mays GRMZM2G125648 N 0.479
Sb07g000230 Sorghum bicolor Sb07g000230 N 0.479
TCM_042534 Theobroma cacao TCM_042534 I 0.479
Aquca_004_00335 Aquilegia coerulea Aquca_004_00335 I 0.478
Pavir.J10680 Panicum virgatum Pavir.J10680 N 0.477
PDK_20s1709771g002 Phoenix dactylifera PDK_20s1709771g002 N 0.474
PGSC0003DMG400018685 Solanum tuberosum PGSC0003DMG400018685 I 0.471
OB08G10120 Oryza brachyantha OB08G10120 N 0.469
GRMZM2G162284 Zea mays GRMZM2G162284 I 0.467
Eucgr.J02535 Eucalyptus grandis Eucgr.J02535 I 0.467
SELMODRAFT_175895 Selaginella moellendorffii SELMODRAFT_175895 I 0.466
SELMODRAFT_38818 Selaginella moellendorffii SELMODRAFT_38818 I 0.466
evm.TU.supercontig_19.183 Carica papaya evm.TU.supercontig_19.183 I 0.465
GLYMA10G43440 Glycine max GLYMA10G43440 I 0.460
GLYMA20G23370 Glycine max GLYMA20G23370 I 0.460
Ca_05351 Cicer arietinum Ca_05351 I 0.460
chr5.CM0180.220.nd Lotus japonicus chr5.CM0180.220.nd I 0.460
Bo8g081200 Brassica oleracea Bo8g081200 I 0.459
evm.TU.supercontig_247.1 Carica papaya evm.TU.supercontig_247.1 N 0.459
Lus10028298.g Linum usitatissimum Lus10028298.g I 0.458
Lus10040192.g Linum usitatissimum Lus10040192.g I 0.458
PRUPE_ppa011596mg Prunus persica PRUPE_ppa011596mg I 0.457
estExt_fgenesh1_pm.C_880025 Physcomitrella patens estExt_fgenesh1_pm.C_880025 I 0.457
gw1.106.59.1 Physcomitrella patens gw1.106.59.1 I 0.457
gw1.106.60.1 Physcomitrella patens gw1.106.60.1 I 0.457
Lus10041009.g Linum usitatissimum Lus10041009.g N 0.456
Lus10012252.g Linum usitatissimum Lus10012252.g I 0.454
Lus10016025.g Linum usitatissimum Lus10016025.g I 0.454
BGIOSGA023639 Oryza indica BGIOSGA023639 I 0.451
PRUPE_ppa026912mg Prunus persica PRUPE_ppa026912mg I 0.451
Pm006054 Prunus mume Pm006054 I 0.451
MDP0000607529 Malus domestica MDP0000607529 I 0.448
Thhalv10009970m.g Eutrema salsugineum Thhalv10009970m.g I 0.448
Si014434m.g Setaria italica Si014434m.g N 0.447
29669.m000844 Ricinus communis 29669.m000844 I 0.447
Aquca_015_00344 Aquilegia coerulea Aquca_015_00344 I 0.447
HMGB1 Arabidopsis thaliana AT3G51880 I 0.446
Bo7g101270 Brassica oleracea Bo7g101270 I 0.446
HMGB1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5001281 I 0.446
Bostr.6864s0060 Boechera stricta Bostr.6864s0060 I 0.446
Cagra.1043s0022 Capsella grandiflora Cagra.1043s0022 I 0.446
Carubv10018109m.g Capsella rubella Carubv10018109m.g I 0.446
Thhalv10010751m.g Eutrema salsugineum Thhalv10010751m.g I 0.446
Traes_5DL_DD9491112 Triticum aestivum Traes_5DL_DD9491112 I 0.445
mgf009330m Mimulus guttatus mgf009330m I 0.444
Ciclev10016587m.g Citrus clementina Ciclev10016587m.g N 0.442
orange1.1g026850m.g Citrus sinensis orange1.1g026850m.g N 0.442
POPTR_0005s10440 Populus trichocarpa POPTR_0005s10440 I 0.441
SELMODRAFT_18312 Selaginella moellendorffii SELMODRAFT_18312 I 0.440
SELMODRAFT_18313 Selaginella moellendorffii SELMODRAFT_18313 I 0.440
MDP0000205665 Malus domestica MDP0000205665 I 0.440
GLYMA16G22060 Glycine max GLYMA16G22060 I 0.439
HMGB3 Arabidopsis thaliana AT1G20696 I 0.437
Bo5g030580 Brassica oleracea Bo5g030580 I 0.437
Bo7g061420 Brassica oleracea Bo7g061420 I 0.437
Bo8g070350 Brassica oleracea Bo8g070350 I 0.437
Bra025838 Brassica rapa Bra025838 I 0.437
HMGB3 Arabidopsis lyrata fgenesh2_kg.1__2258__AT1G20696.3 I 0.437
MTR_8g073345 Medicago truncatula MTR_8g073345 I 0.437
PRUPE_ppa012972mg Prunus persica PRUPE_ppa012972mg I 0.437
Ca_09896 Cicer arietinum Ca_09896 I 0.437
Pm026798 Prunus mume Pm026798 I 0.437
mgf006113m Mimulus guttatus mgf006113m I 0.437
mgf008076m Mimulus guttatus mgf008076m I 0.437
mgf014518m Mimulus guttatus mgf014518m I 0.437
mgf016608m Mimulus guttatus mgf016608m I 0.437
Bostr.7128s0662 Boechera stricta Bostr.7128s0662 I 0.437
Cagra.6160s0027 Capsella grandiflora Cagra.6160s0027 I 0.437
Carubv10012681m.g Capsella rubella Carubv10012681m.g I 0.437
SapurV1A.0016s0600 Salix purpurea SapurV1A.0016s0600 I 0.437
SapurV1A.0085s0030 Salix purpurea SapurV1A.0085s0030 I 0.437
PK03866.1 Cannabis sativa PK03866.1 I 0.436
PGSC0003DMG400001567 Solanum tuberosum PGSC0003DMG400001567 I 0.435
Solyc02g082700.2 Solanum lycopersicum Solyc02g082700.2 I 0.435
gene13043-v1.0-hybrid Fragaria vesca gene13043-v1.0-hybrid I 0.435
Bo2g160920 Brassica oleracea Bo2g160920 I 0.434
Bra029371 Brassica rapa Bra029371 I 0.434
OMERI09G14100 Oryza meridionalis OMERI09G14100 I 0.434
ONIVA09G20030 Oryza nivara ONIVA09G20030 I 0.434
ORGLA09G0150800 Oryza glaberrima ORGLA09G0150800 I 0.434
ORUFI09G20440 Oryza rufipogon ORUFI09G20440 I 0.434
OS09G0551600 Oryza sativa OS09G0551600 I 0.434
HMGB6 Populus trichocarpa POPTR_0007s15320 I 0.434
SapurV1A.0491s0160 Salix purpurea SapurV1A.0491s0160 N 0.434
SapurV1A.0766s0120 Salix purpurea SapurV1A.0766s0120 I 0.434
MTR_7g068280 Medicago truncatula MTR_7g068280 I 0.432
MTR_8g018100 Medicago truncatula MTR_8g018100 N 0.432
HMG-1 Pisum sativum Q41026_PEA D 0.432
LjT35D08.150.nd Lotus japonicus LjT35D08.150.nd I 0.432
MTR_1g115220 Medicago truncatula MTR_1g115220 I 0.431
mgf016363m Mimulus guttatus mgf016363m I 0.431
PGSC0003DMG400025304 Solanum tuberosum PGSC0003DMG400025304 I 0.430
Gorai.013G018500 Gossypium raimondii Gorai.013G018500 I 0.428
orange1.1g031906m.g Citrus sinensis orange1.1g031906m.g I 0.428
GRMZM2G066528 Zea mays GRMZM2G066528 I 0.427
LPERR09G14820 Leersia perrieri LPERR09G14820 I 0.427
OB09G25530 Oryza brachyantha OB09G25530 I 0.427
Sb02g032140 Sorghum bicolor Sb02g032140 I 0.427
Si031512m.g Setaria italica Si031512m.g I 0.427
TRIUR3_27273 Triticum urartu TRIUR3_27273 I 0.427
Pavir.Ba01379 Panicum virgatum Pavir.Ba01379 I 0.427
Pavir.Bb02550 Panicum virgatum Pavir.Bb02550 I 0.427
LPERR08G00140 Leersia perrieri LPERR08G00140 N 0.426
29600.m000548 Ricinus communis 29600.m000548 I 0.426
Pavir.Fb00026 Panicum virgatum Pavir.Fb00026 N 0.426
MTR_3g115580 Medicago truncatula MTR_3g115580 I 0.425
TCM_000068 Theobroma cacao TCM_000068 I 0.425
Ciclev10032930m.g Citrus clementina Ciclev10032930m.g I 0.425
30131.m007272 Ricinus communis 30131.m007272 I 0.421
AMTR_s00044p00160130 Amborella trichopoda AMTR_s00044p00160130 I 0.419
GLYMA09G33070 Glycine max GLYMA09G33070 I 0.419
Ciclev10026715m.g Citrus clementina Ciclev10026715m.g I 0.419
orange1.1g031973m.g Citrus sinensis orange1.1g031973m.g I 0.419
AMTR_s00029p00240750 Amborella trichopoda AMTR_s00029p00240750 I 0.418
BRADI4G37247 Brachypodium distachyon BRADI4G37247 I 0.418
POPTR_0010s19720 Populus trichocarpa POPTR_0010s19720 I 0.418
PRUPE_ppa012424mg Prunus persica PRUPE_ppa012424mg I 0.418
Traes_5BL_9CC98DD38 Triticum aestivum Traes_5BL_9CC98DD38 I 0.418
VIT_04s0044g00110 Vitis vinifera VIT_04s0044g00110 I 0.418
VIT_13s0067g00640 Vitis vinifera VIT_13s0067g00640 I 0.418
VIT_18s0122g01190 Vitis vinifera VIT_18s0122g01190 I 0.418
Pm018913 Prunus mume Pm018913 I 0.418
cassava24859.valid.m1 Manihot esculenta cassava24859.valid.m1 I 0.418
Aquca_045_00054 Aquilegia coerulea Aquca_045_00054 I 0.418
MDP0000362980 Malus domestica MDP0000362980 I 0.418
MDP0000757111 Malus domestica MDP0000757111 I 0.418
PDK_20s1306741g001 Phoenix dactylifera PDK_20s1306741g001 I 0.418
GLYMA01G28820 Glycine max GLYMA01G28820 I 0.417
GLYMA03G08270 Glycine max GLYMA03G08270 I 0.417
PGSC0003DMG400008501 Solanum tuberosum PGSC0003DMG400008501 I 0.417
Gorai.001G198900 Gossypium raimondii Gorai.001G198900 I 0.416
HMGB2 Arabidopsis thaliana AT1G20693 I 0.415
Bra002073 Brassica rapa Bra002073 I 0.415
HMGB2 Arabidopsis lyrata fgenesh2_kg.1__2255__AT1G20693.2 I 0.415
Bostr.7128s0663 Boechera stricta Bostr.7128s0663 I 0.415
Cagra.6160s0028 Capsella grandiflora Cagra.6160s0028 I 0.415
Carubv10010586m.g Capsella rubella Carubv10010586m.g I 0.415
Thhalv10004817m.g Eutrema salsugineum Thhalv10004817m.g N 0.415