Traes_7AL_959534EDB (Triticum aestivum)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 Traes_7AL_959534EDB T333013_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMG-1
M02720_2.00 		Pisum sativum
STYGTDHTY
RADHACRAS		 SELEX
Mathelier et al.(2014)
MA0044.1 		0.422 0.594
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Traes_7AL_959534EDB.1 Sox 84 148

Links

Other Sox family TFs
Other Triticum aestivum TFs

159 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Traes_7BL_871FCAF2F Triticum aestivum Traes_7BL_871FCAF2F I 0.741
Traes_7DL_824BFE90C Triticum aestivum Traes_7DL_824BFE90C I 0.741
TRIUR3_35367 Triticum urartu TRIUR3_35367 I 0.741
MLOC_77667 Hordeum vulgare MLOC_77667 I 0.701
BRADI3G12920 Brachypodium distachyon BRADI3G12920 I 0.623
Sb07g000230 Sorghum bicolor Sb07g000230 N 0.591
GRMZM2G125648 Zea mays GRMZM2G125648 N 0.564
Pavir.J10680 Panicum virgatum Pavir.J10680 N 0.562
Si014434m.g Setaria italica Si014434m.g N 0.532
PDK_20s1709771g002 Phoenix dactylifera PDK_20s1709771g002 N 0.531
PK14705.1 Cannabis sativa PK14705.1 I 0.516
Pavir.Fb00026 Panicum virgatum Pavir.Fb00026 N 0.511
orange1.1g029982m.g Citrus sinensis orange1.1g029982m.g I 0.510
BGIOSGA027814 Oryza indica BGIOSGA027814 I 0.506
BGIOSGA027819 Oryza indica BGIOSGA027819 I 0.506
OBART08G00070 Oryza barthii OBART08G00070 I 0.506
OGLUM08G00090 Oryza glumaepatula OGLUM08G00090 I 0.506
OLONG_014445 Oryza longistaminata OLONG_014445 I 0.506
ONIVA08G00070 Oryza nivara ONIVA08G00070 I 0.506
OPUNC08G00150 Oryza punctata OPUNC08G00150 I 0.506
ORUFI08G00080 Oryza rufipogon ORUFI08G00080 I 0.506
OS08G0101100 Oryza sativa OS08G0101100 I 0.506
TCM_042534 Theobroma cacao TCM_042534 I 0.506
Aquca_004_00335 Aquilegia coerulea Aquca_004_00335 I 0.505
PRUPE_ppa011596mg Prunus persica PRUPE_ppa011596mg I 0.504
BGIOSGA023639 Oryza indica BGIOSGA023639 I 0.489
OB08G10120 Oryza brachyantha OB08G10120 N 0.488
GLYMA16G22060 Glycine max GLYMA16G22060 I 0.486
PRUPE_ppa026912mg Prunus persica PRUPE_ppa026912mg I 0.481
Pm006054 Prunus mume Pm006054 I 0.481
SELMODRAFT_175895 Selaginella moellendorffii SELMODRAFT_175895 I 0.476
SELMODRAFT_38818 Selaginella moellendorffii SELMODRAFT_38818 I 0.476
orange1.1g031906m.g Citrus sinensis orange1.1g031906m.g I 0.475
LPERR08G00140 Leersia perrieri LPERR08G00140 N 0.472
Ciclev10016587m.g Citrus clementina Ciclev10016587m.g N 0.471
orange1.1g026850m.g Citrus sinensis orange1.1g026850m.g N 0.471
MDP0000205665 Malus domestica MDP0000205665 I 0.470
MTR_8g018100 Medicago truncatula MTR_8g018100 N 0.469
PK03866.1 Cannabis sativa PK03866.1 I 0.465
HMGB6 Populus trichocarpa POPTR_0007s15320 I 0.464
Lus10012252.g Linum usitatissimum Lus10012252.g I 0.464
Lus10016025.g Linum usitatissimum Lus10016025.g I 0.464
SapurV1A.0766s0120 Salix purpurea SapurV1A.0766s0120 I 0.464
MDP0000607529 Malus domestica MDP0000607529 I 0.463
evm.TU.supercontig_247.1 Carica papaya evm.TU.supercontig_247.1 N 0.461
GLYMA10G43440 Glycine max GLYMA10G43440 I 0.460
GLYMA20G23370 Glycine max GLYMA20G23370 I 0.460
Ca_05351 Cicer arietinum Ca_05351 I 0.460
chr5.CM0180.220.nd Lotus japonicus chr5.CM0180.220.nd I 0.460
Thhalv10009970m.g Eutrema salsugineum Thhalv10009970m.g I 0.458
Lus10040192.g Linum usitatissimum Lus10040192.g I 0.457
Gorai.008G147700 Gossypium raimondii Gorai.008G147700 I 0.456
evm.TU.supercontig_19.183 Carica papaya evm.TU.supercontig_19.183 I 0.455
PGSC0003DMG400018685 Solanum tuberosum PGSC0003DMG400018685 I 0.454
Si007288m.g Setaria italica Si007288m.g I 0.454
mgf009330m Mimulus guttatus mgf009330m I 0.454
Gorai.013G018500 Gossypium raimondii Gorai.013G018500 I 0.454
HMGB3 Arabidopsis thaliana AT1G20696 I 0.453
Eucgr.J02535 Eucalyptus grandis Eucgr.J02535 I 0.453
POPTR_0005s10440 Populus trichocarpa POPTR_0005s10440 I 0.451
SapurV1A.0491s0160 Salix purpurea SapurV1A.0491s0160 N 0.451
SELMODRAFT_18312 Selaginella moellendorffii SELMODRAFT_18312 I 0.450
SELMODRAFT_18313 Selaginella moellendorffii SELMODRAFT_18313 I 0.450
Lus10028298.g Linum usitatissimum Lus10028298.g I 0.448
Bo5g030580 Brassica oleracea Bo5g030580 I 0.447
Bo7g061420 Brassica oleracea Bo7g061420 I 0.447
Bo8g070350 Brassica oleracea Bo8g070350 I 0.447
Bra025838 Brassica rapa Bra025838 I 0.447
BRADI1G29730 Brachypodium distachyon BRADI1G29730 I 0.447
HMGB3 Arabidopsis lyrata fgenesh2_kg.1__2258__AT1G20696.3 I 0.447
GRMZM5G834758 Zea mays GRMZM5G834758 I 0.447
MTR_8g073345 Medicago truncatula MTR_8g073345 I 0.447
PRUPE_ppa012972mg Prunus persica PRUPE_ppa012972mg I 0.447
Ca_09896 Cicer arietinum Ca_09896 I 0.447
Pm026798 Prunus mume Pm026798 I 0.447
mgf006113m Mimulus guttatus mgf006113m I 0.447
mgf008076m Mimulus guttatus mgf008076m I 0.447
mgf014518m Mimulus guttatus mgf014518m I 0.447
mgf016608m Mimulus guttatus mgf016608m I 0.447
Bostr.7128s0662 Boechera stricta Bostr.7128s0662 I 0.447
Cagra.6160s0027 Capsella grandiflora Cagra.6160s0027 I 0.447
Carubv10012681m.g Capsella rubella Carubv10012681m.g I 0.447
Pavir.Ba01379 Panicum virgatum Pavir.Ba01379 I 0.447
SapurV1A.0016s0600 Salix purpurea SapurV1A.0016s0600 I 0.447
SapurV1A.0085s0030 Salix purpurea SapurV1A.0085s0030 I 0.447
GLYMA01G28820 Glycine max GLYMA01G28820 I 0.444
GLYMA03G08270 Glycine max GLYMA03G08270 I 0.444
PGSC0003DMG400008501 Solanum tuberosum PGSC0003DMG400008501 I 0.444
Gorai.001G198900 Gossypium raimondii Gorai.001G198900 I 0.443
Aquca_035_00040 Aquilegia coerulea Aquca_035_00040 I 0.438
BGIOSGA016928 Oryza indica BGIOSGA016928 N 0.437
OB04G28810 Oryza brachyantha OB04G28810 N 0.437
OBART04G21800 Oryza barthii OBART04G21800 N 0.437
OGLUM04G21840 Oryza glumaepatula OGLUM04G21840 N 0.437
OMERI04G18350 Oryza meridionalis OMERI04G18350 N 0.437
ONIVA04G20340 Oryza nivara ONIVA04G20340 N 0.437
OPUNC04G19550 Oryza punctata OPUNC04G19550 N 0.437
ORGLA04G0188600 Oryza glaberrima ORGLA04G0188600 N 0.437
ORUFI04G23400 Oryza rufipogon ORUFI04G23400 N 0.437
OS04G0564600 Oryza sativa OS04G0564600 N 0.437
29669.m000844 Ricinus communis 29669.m000844 I 0.437
estExt_fgenesh1_pm.C_880025 Physcomitrella patens estExt_fgenesh1_pm.C_880025 I 0.437
Aquca_015_00344 Aquilegia coerulea Aquca_015_00344 I 0.437
SapurV1A.2780s0020 Salix purpurea SapurV1A.2780s0020 I 0.433
MTR_1g115220 Medicago truncatula MTR_1g115220 I 0.431
GRMZM2G162284 Zea mays GRMZM2G162284 I 0.430
AMTR_s00044p00160130 Amborella trichopoda AMTR_s00044p00160130 I 0.429
GLYMA09G33070 Glycine max GLYMA09G33070 I 0.429
Ciclev10026715m.g Citrus clementina Ciclev10026715m.g I 0.429
orange1.1g031973m.g Citrus sinensis orange1.1g031973m.g I 0.429
F775_06533 Aegilops tauschii F775_06533 N 0.428
Traes_2DL_6CACFD720 Triticum aestivum Traes_2DL_6CACFD720 N 0.428
gw1.106.59.1 Physcomitrella patens gw1.106.59.1 I 0.427
gw1.106.60.1 Physcomitrella patens gw1.106.60.1 I 0.427
Lus10041009.g Linum usitatissimum Lus10041009.g N 0.426
HMGB2 Arabidopsis thaliana AT1G20693 I 0.425
Bra002073 Brassica rapa Bra002073 I 0.425
HMGB2 Arabidopsis lyrata fgenesh2_kg.1__2255__AT1G20693.2 I 0.425
Bostr.7128s0663 Boechera stricta Bostr.7128s0663 I 0.425
Cagra.6160s0028 Capsella grandiflora Cagra.6160s0028 I 0.425
Carubv10010586m.g Capsella rubella Carubv10010586m.g I 0.425
OESDEN_24828 Oesophagostomum dentatum OESDEN_24828 N 0.424
MTR_7g068280 Medicago truncatula MTR_7g068280 I 0.422
HMG-1 Pisum sativum Q41026_PEA D 0.422
LjT35D08.150.nd Lotus japonicus LjT35D08.150.nd I 0.422
Bo8g081200 Brassica oleracea Bo8g081200 I 0.421
GSMUA_AchrUn_randomG05290_001 Musa acuminata GSMUA_AchrUn_randomG05290_001 I 0.420
PGSC0003DMG400025304 Solanum tuberosum PGSC0003DMG400025304 I 0.420
PGSC0003DMG400001567 Solanum tuberosum PGSC0003DMG400001567 I 0.418
POPTR_0002s01000 Populus trichocarpa POPTR_0002s01000 I 0.418
XM_002306945.1 Populus trichocarpa POPTR_0005s27390 I 0.418
Solyc02g082700.2 Solanum lycopersicum Solyc02g082700.2 I 0.418
TCM_034406 Theobroma cacao TCM_034406 I 0.418
Cla009093 Citrullus lanatus Cla009093 I 0.418
30170.m014386 Ricinus communis 30170.m014386 I 0.418
cassava18624.valid.m1 Manihot esculenta cassava18624.valid.m1 I 0.418
cassava18625.valid.m1 Manihot esculenta cassava18625.valid.m1 I 0.418
cassava18626.valid.m1 Manihot esculenta cassava18626.valid.m1 I 0.418
cassava35948.valid.m1 Manihot esculenta cassava35948.valid.m1 I 0.418
Cucsa.323100 Cucumis sativus Cucsa.323100 I 0.418
Ciclev10002782m.g Citrus clementina Ciclev10002782m.g I 0.418
Eucgr.F03571 Eucalyptus grandis Eucgr.F03571 I 0.418
evm.TU.supercontig_26.174 Carica papaya evm.TU.supercontig_26.174 I 0.418
gene13043-v1.0-hybrid Fragaria vesca gene13043-v1.0-hybrid I 0.418
Gorai.002G115100 Gossypium raimondii Gorai.002G115100 I 0.418
Gorai.005G114500 Gossypium raimondii Gorai.005G114500 I 0.418
Gorai.009G186800 Gossypium raimondii Gorai.009G186800 I 0.418
MDP0000275042 Malus domestica MDP0000275042 I 0.418
SapurV1A.0266s0310 Salix purpurea SapurV1A.0266s0310 I 0.418
Thhalv10009371m.g Eutrema salsugineum Thhalv10009371m.g I 0.418
MTR_7g082820 Medicago truncatula MTR_7g082820 I 0.417
HMGB1 Arabidopsis thaliana AT3G51880 I 0.415
HMGB1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5001281 I 0.415
MTR_3g115580 Medicago truncatula MTR_3g115580 I 0.415
TCM_000068 Theobroma cacao TCM_000068 I 0.415
Bostr.6864s0060 Boechera stricta Bostr.6864s0060 I 0.415
Cagra.1043s0022 Capsella grandiflora Cagra.1043s0022 I 0.415
Carubv10018109m.g Capsella rubella Carubv10018109m.g I 0.415
Ciclev10032930m.g Citrus clementina Ciclev10032930m.g I 0.415