HMGB6 (Populus trichocarpa)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 POPTR_0007s15320 T332129_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMG-1
M02720_2.00 		Pisum sativum
STYGTDHTY
RADHACRAS		 SELEX
Mathelier et al.(2014)
MA0044.1 		0.416 0.537
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0007s15320.1 Sox 105 172

Links

Other Sox family TFs
Other Populus trichocarpa TFs

100 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SapurV1A.0766s0120 Salix purpurea SapurV1A.0766s0120 I 0.703
MDP0000205665 Malus domestica MDP0000205665 I 0.689
PRUPE_ppa026912mg Prunus persica PRUPE_ppa026912mg I 0.686
Pm006054 Prunus mume Pm006054 I 0.686
TCM_007659 Theobroma cacao TCM_007659 I 0.616
evm.TU.supercontig_247.1 Carica papaya evm.TU.supercontig_247.1 N 0.613
Bo2g160920 Brassica oleracea Bo2g160920 I 0.609
Bra029371 Brassica rapa Bra029371 I 0.609
HMGB6 Vitis vinifera VIT_10s0071g00870 I 0.609
Gorai.008G147700 Gossypium raimondii Gorai.008G147700 I 0.607
Cla009222 Citrullus lanatus Cla009222 I 0.603
Cucsa.300030 Cucumis sativus Cucsa.300030 I 0.603
BGIOSGA027814 Oryza indica BGIOSGA027814 I 0.596
BGIOSGA027819 Oryza indica BGIOSGA027819 I 0.596
OBART08G00070 Oryza barthii OBART08G00070 I 0.596
OGLUM08G00090 Oryza glumaepatula OGLUM08G00090 I 0.596
OLONG_014445 Oryza longistaminata OLONG_014445 I 0.596
ONIVA08G00070 Oryza nivara ONIVA08G00070 I 0.596
OPUNC08G00150 Oryza punctata OPUNC08G00150 I 0.596
ORUFI08G00080 Oryza rufipogon ORUFI08G00080 I 0.596
OS08G0101100 Oryza sativa OS08G0101100 I 0.596
Si014434m.g Setaria italica Si014434m.g N 0.595
Thhalv10004817m.g Eutrema salsugineum Thhalv10004817m.g N 0.590
Ciclev10016587m.g Citrus clementina Ciclev10016587m.g N 0.587
orange1.1g026850m.g Citrus sinensis orange1.1g026850m.g N 0.587
GRMZM2G125648 Zea mays GRMZM2G125648 N 0.586
Eucgr.J00336 Eucalyptus grandis Eucgr.J00336 I 0.580
OB08G10120 Oryza brachyantha OB08G10120 N 0.577
PK03866.1 Cannabis sativa PK03866.1 I 0.565
Sb07g000230 Sorghum bicolor Sb07g000230 N 0.563
30131.m007272 Ricinus communis 30131.m007272 I 0.563
Cagra.0086s0060 Capsella grandiflora Cagra.0086s0060 I 0.562
Carubv10001858m.g Capsella rubella Carubv10001858m.g I 0.562
Pavir.J10680 Panicum virgatum Pavir.J10680 N 0.560
PGSC0003DMG400025304 Solanum tuberosum PGSC0003DMG400025304 I 0.555
Bo9g014140 Brassica oleracea Bo9g014140 I 0.551
Bra026498 Brassica rapa Bra026498 I 0.551
PDK_20s1709771g002 Phoenix dactylifera PDK_20s1709771g002 N 0.551
Lus10041009.g Linum usitatissimum Lus10041009.g N 0.547
Bostr.10199s0131 Boechera stricta Bostr.10199s0131 N 0.535
PDK_20s1355261g001 Phoenix dactylifera PDK_20s1355261g001 N 0.528
mgf009124m Mimulus guttatus mgf009124m N 0.512
GSMUA_AchrUn_randomG05290_001 Musa acuminata GSMUA_AchrUn_randomG05290_001 I 0.508
LPERR08G00140 Leersia perrieri LPERR08G00140 N 0.507
GLYMA10G43440 Glycine max GLYMA10G43440 I 0.505
GLYMA20G23370 Glycine max GLYMA20G23370 I 0.505
Solyc04g008820.2 Solanum lycopersicum Solyc04g008820.2 I 0.503
AMTR_s00171p00070550 Amborella trichopoda AMTR_s00171p00070550 I 0.499
Ca_05351 Cicer arietinum Ca_05351 I 0.485
chr5.CM0180.220.nd Lotus japonicus chr5.CM0180.220.nd I 0.477
fgenesh2_kg.6__1935__AT5G23420.1 Arabidopsis lyrata fgenesh2_kg.6__1935__AT5G23420.1 N 0.474
MTR_1g115220 Medicago truncatula MTR_1g115220 I 0.469
fgenesh1_pg.4_#_114 Coccomyxa subellipsoidea C169 fgenesh1_pg.4_#_114 N 0.468
fgeneshCV_pg.C_scaffold_4000123 Chlorella vulgaris fgeneshCV_pg.C_scaffold_4000123 N 0.468
Traes_7AL_959534EDB Triticum aestivum Traes_7AL_959534EDB I 0.464
Traes_7BL_871FCAF2F Triticum aestivum Traes_7BL_871FCAF2F I 0.464
Traes_7DL_824BFE90C Triticum aestivum Traes_7DL_824BFE90C I 0.464
TRIUR3_35367 Triticum urartu TRIUR3_35367 I 0.464
SNAPOd2T00000181001 Oikopleura dioica SNAPOd2T00000181001 N 0.462
MLOC_77667 Hordeum vulgare MLOC_77667 I 0.461
cassava1392.valid.m1 Manihot esculenta cassava1392.valid.m1 I 0.454
gene00778-v1.0-hybrid Fragaria vesca gene00778-v1.0-hybrid N 0.452
LDEC020995 Leptinotarsa decemlineata LDEC020995 N 0.450
HMGB7 Arabidopsis thaliana AT5G23420 N 0.449
scaffold_602413.1 Arabidopsis lyrata scaffold_602413.1 N 0.449
BGIBMGA005288 Bombyx mori BGIBMGA005288 N 0.446
BGIOSGA023639 Oryza indica BGIOSGA023639 I 0.446
HMEL015307 Heliconius melpomene HMEL015307 N 0.446
OESDEN_24828 Oesophagostomum dentatum OESDEN_24828 N 0.443
PPAI002521 Phlebotomus papatasi PPAI002521 N 0.442
AAEL002381 Aedes aegypti AAEL002381 N 0.441
Aquca_035_00040 Aquilegia coerulea Aquca_035_00040 I 0.441
Ssrp Drosophila melanogaster FBgn0010278 N 0.437
GF12460 Drosophila ananassae FBgn0089497 N 0.437
GG19998 Drosophila erecta FBgn0112197 N 0.437
GD25013 Drosophila simulans FBgn0196325 N 0.437
GJ21774 Drosophila virilis FBgn0208892 N 0.437
GE11532 Drosophila yakuba FBgn0229332 N 0.437
MDOA007633 Musca domestica MDOA007633 N 0.437
GH21151 Drosophila grimshawi FBgn0128613 N 0.436
cassava23716.valid.m1 Manihot esculenta cassava23716.valid.m1 I 0.435
BRADI3G12920 Brachypodium distachyon BRADI3G12920 I 0.434
KGM_13851 Danaus plexippus KGM_13851 N 0.434
Pavir.Fb00026 Panicum virgatum Pavir.Fb00026 N 0.434
AMAG_00757 Allomyces macrogynus AMAG_00757 N 0.428
AMAG_02260 Allomyces macrogynus AMAG_02260 N 0.428
YQE_02071 Dendroctonus ponderosae YQE_02071 N 0.426
estExt_fgenesh1_pm.C_880025 Physcomitrella patens estExt_fgenesh1_pm.C_880025 I 0.424
MTR_7g068280 Medicago truncatula MTR_7g068280 I 0.423
LjT35D08.150.nd Lotus japonicus LjT35D08.150.nd I 0.423
CpipJ_CPIJ020011 Culex pipiens CpipJ_CPIJ020011 I 0.422
CPIJ020011 Culex quinquefasciatus CPIJ020011 I 0.422
L798_13679 Zootermopsis nevadensis L798_13679 N 0.421
OSTLU_15773 Ostreococcus lucimarinus OSTLU_15773 N 0.418
Cflo_11824--XP_001120264.1_APIME Camponotus floridanus Cflo_11824--XP_001120264.1_APIME N 0.417
ENSMMUP00000037751 Macaca fascicularis ENSMMUP00000037751 N 0.417
Hsal_00538--XP_001120264.1_APIME Harpegnathos saltator Hsal_00538--XP_001120264.1_APIME N 0.417
HMG-1 Pisum sativum Q41026_PEA D 0.416
gw1.106.59.1 Physcomitrella patens gw1.106.59.1 I 0.415
gw1.106.60.1 Physcomitrella patens gw1.106.60.1 I 0.415